miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15681 3' -59.5 NC_004065.1 + 19759 0.74 0.421877
Target:  5'- gGgGCGUGCGGG-GGUGuGGGCGacggaGCCg -3'
miRNA:   3'- -CgCGCACGCUCaCCACcUCCGUg----CGG- -5'
15681 3' -59.5 NC_004065.1 + 23616 0.74 0.430247
Target:  5'- gGCGgGcagGCGGGUGGacgGGcGGCugGCCu -3'
miRNA:   3'- -CGCgCa--CGCUCACCa--CCuCCGugCGG- -5'
15681 3' -59.5 NC_004065.1 + 45820 0.72 0.556295
Target:  5'- cCGCGUGCGGGUGGgcauguaucGGAccGGC-CGCa -3'
miRNA:   3'- cGCGCACGCUCACCa--------CCU--CCGuGCGg -5'
15681 3' -59.5 NC_004065.1 + 88967 0.71 0.575324
Target:  5'- cGCGCGUGauGGUGGccaccUGGGGcGCcuugACGCCg -3'
miRNA:   3'- -CGCGCACgcUCACC-----ACCUC-CG----UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 97043 0.71 0.584894
Target:  5'- uGCGCGUGCGAgcucuccugguGUGGUGGcgauGGUgauUGCUg -3'
miRNA:   3'- -CGCGCACGCU-----------CACCACCu---CCGu--GCGG- -5'
15681 3' -59.5 NC_004065.1 + 134931 0.7 0.67166
Target:  5'- cGCGaCGU-CGAGUGGUGGaAGG-ACGUg -3'
miRNA:   3'- -CGC-GCAcGCUCACCACC-UCCgUGCGg -5'
15681 3' -59.5 NC_004065.1 + 50301 0.69 0.694613
Target:  5'- cGCGCGgcgaucGCGAGgcaacaacagagaGUGGuGGCACGCg -3'
miRNA:   3'- -CGCGCa-----CGCUCac-----------CACCuCCGUGCGg -5'
15681 3' -59.5 NC_004065.1 + 119192 0.69 0.728507
Target:  5'- cCGUGaGCGAGUc-UGGAGGCGUGCCg -3'
miRNA:   3'- cGCGCaCGCUCAccACCUCCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 44524 0.68 0.746945
Target:  5'- gGCGCGaUGUuaccGGGgacGGUGGcGGCGCuGCCu -3'
miRNA:   3'- -CGCGC-ACG----CUCa--CCACCuCCGUG-CGG- -5'
15681 3' -59.5 NC_004065.1 + 24814 0.68 0.773909
Target:  5'- -aGCGagagcccuuuCGGGUGGUGGAGacGCACGCg -3'
miRNA:   3'- cgCGCac--------GCUCACCACCUC--CGUGCGg -5'
15681 3' -59.5 NC_004065.1 + 124216 0.68 0.773909
Target:  5'- -gGCGUGCGgugccAGUGGUGGuacucGUGCGCg -3'
miRNA:   3'- cgCGCACGC-----UCACCACCuc---CGUGCGg -5'
15681 3' -59.5 NC_004065.1 + 92530 0.68 0.791333
Target:  5'- cGCGCGcGCGuacgGGcgGGcGGGCGCGCg -3'
miRNA:   3'- -CGCGCaCGCuca-CCa-CC-UCCGUGCGg -5'
15681 3' -59.5 NC_004065.1 + 119438 0.67 0.816492
Target:  5'- --cCGUGCGcGUGGUGGucGCcgagaccgACGCCu -3'
miRNA:   3'- cgcGCACGCuCACCACCucCG--------UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 62392 0.67 0.824589
Target:  5'- -gGCG-GCGGG-GGUGGcGGC-CGCg -3'
miRNA:   3'- cgCGCaCGCUCaCCACCuCCGuGCGg -5'
15681 3' -59.5 NC_004065.1 + 33169 0.67 0.840309
Target:  5'- aCGCGcGCGAGcGGacUGGAGgaaccgaaguGCACGUCg -3'
miRNA:   3'- cGCGCaCGCUCaCC--ACCUC----------CGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 19560 0.66 0.86261
Target:  5'- cUGCGUGgGuGUcGGUGGcGGCgguaGCGUCg -3'
miRNA:   3'- cGCGCACgCuCA-CCACCuCCG----UGCGG- -5'
15681 3' -59.5 NC_004065.1 + 229477 0.66 0.86261
Target:  5'- uGCGCGaacaGGG-GGcgcucgcacaGGGGGCGCGCCa -3'
miRNA:   3'- -CGCGCacg-CUCaCCa---------CCUCCGUGCGG- -5'
15681 3' -59.5 NC_004065.1 + 65700 0.75 0.366143
Target:  5'- cGgGCGUGCGAGcUGGUGGA--CGCGCa -3'
miRNA:   3'- -CgCGCACGCUC-ACCACCUccGUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.