miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15681 5' -55.8 NC_004065.1 + 51863 0.66 0.967335
Target:  5'- ---cUGUCCgGACCGCUCAUgauCAUCu -3'
miRNA:   3'- gaccGCAGGaCUGGCGAGUGau-GUGG- -5'
15681 5' -55.8 NC_004065.1 + 141072 0.66 0.967335
Target:  5'- gCUGGCacuacgcgggCCUGGCCaGCUacCGCcGCGCCu -3'
miRNA:   3'- -GACCGca--------GGACUGG-CGA--GUGaUGUGG- -5'
15681 5' -55.8 NC_004065.1 + 65487 0.66 0.967335
Target:  5'- gUGGCGUUCaacaucaaccGGCUGUUCgcGCUGCGCUa -3'
miRNA:   3'- gACCGCAGGa---------CUGGCGAG--UGAUGUGG- -5'
15681 5' -55.8 NC_004065.1 + 46294 0.66 0.967335
Target:  5'- -gGGCGaCCUgGACCuGuCUCAggGCGCCu -3'
miRNA:   3'- gaCCGCaGGA-CUGG-C-GAGUgaUGUGG- -5'
15681 5' -55.8 NC_004065.1 + 151380 0.66 0.964219
Target:  5'- -cGGCGUUgccGCCGCcuUCGCUGCuGCCg -3'
miRNA:   3'- gaCCGCAGgacUGGCG--AGUGAUG-UGG- -5'
15681 5' -55.8 NC_004065.1 + 87282 0.66 0.963897
Target:  5'- -gGGCGcCCUGAUCGCaauaucccccauaUCcuGCUcCACCg -3'
miRNA:   3'- gaCCGCaGGACUGGCG-------------AG--UGAuGUGG- -5'
15681 5' -55.8 NC_004065.1 + 21701 0.66 0.960901
Target:  5'- -gGGCcacgaUCUGGCCGgaauguaUCGCUGCGCCg -3'
miRNA:   3'- gaCCGca---GGACUGGCg------AGUGAUGUGG- -5'
15681 5' -55.8 NC_004065.1 + 132366 0.66 0.960901
Target:  5'- -cGGCGUucaCCUcGaACCGCcgCGCguccgGCACCg -3'
miRNA:   3'- gaCCGCA---GGA-C-UGGCGa-GUGa----UGUGG- -5'
15681 5' -55.8 NC_004065.1 + 61448 0.66 0.960901
Target:  5'- -gGGCcggCCcGAcCCGCUCcgugaugcGCUGCGCCa -3'
miRNA:   3'- gaCCGca-GGaCU-GGCGAG--------UGAUGUGG- -5'
15681 5' -55.8 NC_004065.1 + 60856 0.66 0.960901
Target:  5'- -cGGCGUgUUGACCGCgaaggcCAC-AgGCCc -3'
miRNA:   3'- gaCCGCAgGACUGGCGa-----GUGaUgUGG- -5'
15681 5' -55.8 NC_004065.1 + 129659 0.66 0.960901
Target:  5'- aCUGGcCGUC--GACCgGCUCAUcuuccgcgcuaUACGCCa -3'
miRNA:   3'- -GACC-GCAGgaCUGG-CGAGUG-----------AUGUGG- -5'
15681 5' -55.8 NC_004065.1 + 87660 0.66 0.957376
Target:  5'- aUGGCGgugCCgaaccaaGGCCGCUCGaucaACCg -3'
miRNA:   3'- gACCGCa--GGa------CUGGCGAGUgaugUGG- -5'
15681 5' -55.8 NC_004065.1 + 78912 0.66 0.957376
Target:  5'- -cGGCG-CC-GGCCGCUgCGCUgGCgGCCg -3'
miRNA:   3'- gaCCGCaGGaCUGGCGA-GUGA-UG-UGG- -5'
15681 5' -55.8 NC_004065.1 + 148566 0.66 0.957376
Target:  5'- -gGGCGaCCUGGCgGCcgaggUGCUgaACACCg -3'
miRNA:   3'- gaCCGCaGGACUGgCGa----GUGA--UGUGG- -5'
15681 5' -55.8 NC_004065.1 + 18926 0.66 0.957376
Target:  5'- -gGGCGaaUCCggGACCGCUgGCgaagAUGCUa -3'
miRNA:   3'- gaCCGC--AGGa-CUGGCGAgUGa---UGUGG- -5'
15681 5' -55.8 NC_004065.1 + 45796 0.66 0.957376
Target:  5'- -gGGCGgcugCCgccGCCGC-CGCgGCGCCg -3'
miRNA:   3'- gaCCGCa---GGac-UGGCGaGUGaUGUGG- -5'
15681 5' -55.8 NC_004065.1 + 135328 0.66 0.957012
Target:  5'- aCUGGCGcugcggggcccgcUCCgcGGCUGC-CGCgUACGCCu -3'
miRNA:   3'- -GACCGC-------------AGGa-CUGGCGaGUG-AUGUGG- -5'
15681 5' -55.8 NC_004065.1 + 29957 0.66 0.953639
Target:  5'- -cGGCGUCC--GCCGCUCG----ACCg -3'
miRNA:   3'- gaCCGCAGGacUGGCGAGUgaugUGG- -5'
15681 5' -55.8 NC_004065.1 + 225055 0.66 0.953639
Target:  5'- -cGGCgGUCgUGACCGU--GCUGcCGCCc -3'
miRNA:   3'- gaCCG-CAGgACUGGCGagUGAU-GUGG- -5'
15681 5' -55.8 NC_004065.1 + 122238 0.66 0.953639
Target:  5'- -cGGCGggucguUCCUGucGCCGCU-GCUGC-CCg -3'
miRNA:   3'- gaCCGC------AGGAC--UGGCGAgUGAUGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.