miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15682 5' -55.6 NC_004065.1 + 90148 0.66 0.972445
Target:  5'- gUCCGgg--CACGGGaGgGACGaGAUCa -3'
miRNA:   3'- -AGGCagaaGUGCCC-CgCUGCaCUAGa -5'
15682 5' -55.6 NC_004065.1 + 120211 0.66 0.972445
Target:  5'- gCCGaUCUUCuu-GGGCGgaccgcGCGUGAUCg -3'
miRNA:   3'- aGGC-AGAAGugcCCCGC------UGCACUAGa -5'
15682 5' -55.6 NC_004065.1 + 196852 0.66 0.966743
Target:  5'- cCUGcCUggacgagaUCACGGGGCGACuGUGcugcuUCUg -3'
miRNA:   3'- aGGCaGA--------AGUGCCCCGCUG-CACu----AGA- -5'
15682 5' -55.6 NC_004065.1 + 174638 0.66 0.963599
Target:  5'- cCCGUCggUUGCGGGGUGcCGgaggacuggGGUCg -3'
miRNA:   3'- aGGCAGa-AGUGCCCCGCuGCa--------CUAGa -5'
15682 5' -55.6 NC_004065.1 + 30624 0.66 0.960253
Target:  5'- gCCGUUUUCAuUGGGGCcgaucACGcGGUCUa -3'
miRNA:   3'- aGGCAGAAGU-GCCCCGc----UGCaCUAGA- -5'
15682 5' -55.6 NC_004065.1 + 126237 0.67 0.956702
Target:  5'- -gCGUCUUCACGcccGuGCGGCG-GAUCg -3'
miRNA:   3'- agGCAGAAGUGCc--C-CGCUGCaCUAGa -5'
15682 5' -55.6 NC_004065.1 + 128309 0.67 0.956702
Target:  5'- uUCUGU--UCGCGGaccaCGACGUGAUCUg -3'
miRNA:   3'- -AGGCAgaAGUGCCcc--GCUGCACUAGA- -5'
15682 5' -55.6 NC_004065.1 + 202431 0.67 0.956702
Target:  5'- gCCGUggugcCGCGGGGCGAacUGGUCg -3'
miRNA:   3'- aGGCAgaa--GUGCCCCGCUgcACUAGa -5'
15682 5' -55.6 NC_004065.1 + 201326 0.67 0.94477
Target:  5'- cUCCGUCgccggagGCGGGGCGcuACGacacgGAUCa -3'
miRNA:   3'- -AGGCAGaag----UGCCCCGC--UGCa----CUAGa -5'
15682 5' -55.6 NC_004065.1 + 191110 0.67 0.94477
Target:  5'- -aUGUUUUUaccgACGGcGGCGGCGUGGUUa -3'
miRNA:   3'- agGCAGAAG----UGCC-CCGCUGCACUAGa -5'
15682 5' -55.6 NC_004065.1 + 111733 0.67 0.935724
Target:  5'- gCCGUCgccuUCGCcu-GCGACGUGGUCg -3'
miRNA:   3'- aGGCAGa---AGUGcccCGCUGCACUAGa -5'
15682 5' -55.6 NC_004065.1 + 134216 0.68 0.930868
Target:  5'- cUCCGUUUUCcccgGGGGCuGCGUGAg-- -3'
miRNA:   3'- -AGGCAGAAGug--CCCCGcUGCACUaga -5'
15682 5' -55.6 NC_004065.1 + 154009 0.68 0.919942
Target:  5'- gUCGUgUUCGCGGcggcggcGGCGACGUuGUCa -3'
miRNA:   3'- aGGCAgAAGUGCC-------CCGCUGCAcUAGa -5'
15682 5' -55.6 NC_004065.1 + 114463 0.68 0.909211
Target:  5'- gCCGUCUcaccaUCGCGGcGGUGGCGguacuuucGAUCc -3'
miRNA:   3'- aGGCAGA-----AGUGCC-CCGCUGCa-------CUAGa -5'
15682 5' -55.6 NC_004065.1 + 203083 0.68 0.909211
Target:  5'- cCCG-CgagcgUCAUGGcGGCGGuCGUGGUCg -3'
miRNA:   3'- aGGCaGa----AGUGCC-CCGCU-GCACUAGa -5'
15682 5' -55.6 NC_004065.1 + 115624 0.69 0.903242
Target:  5'- gCUGUCUUCagGCGGGGUaggcugGACGgcaugGGUCUc -3'
miRNA:   3'- aGGCAGAAG--UGCCCCG------CUGCa----CUAGA- -5'
15682 5' -55.6 NC_004065.1 + 100477 0.71 0.807256
Target:  5'- cCCGUgUUCAacuuCGuGGGCGACGUGGa-- -3'
miRNA:   3'- aGGCAgAAGU----GC-CCCGCUGCACUaga -5'
15682 5' -55.6 NC_004065.1 + 55887 0.71 0.789899
Target:  5'- cCCGUCUUCAUGGucaaGGCGuGCGUGuccgggGUCUg -3'
miRNA:   3'- aGGCAGAAGUGCC----CCGC-UGCAC------UAGA- -5'
15682 5' -55.6 NC_004065.1 + 131351 0.74 0.667064
Target:  5'- cCCGUCgau-CGGGaCGACGUGAUCa -3'
miRNA:   3'- aGGCAGaaguGCCCcGCUGCACUAGa -5'
15682 5' -55.6 NC_004065.1 + 123725 0.75 0.58708
Target:  5'- cCCGUggggcucgcagcgCgggUCGCuGGGCGACGUGAUCUa -3'
miRNA:   3'- aGGCA-------------Ga--AGUGcCCCGCUGCACUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.