miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15683 3' -57.3 NC_004065.1 + 50619 0.68 0.835908
Target:  5'- cUCGUCAGGaugaCAGCGGGgGGGcucgGGAUc-- -3'
miRNA:   3'- -AGCAGUCC----GUCGCCCgCCU----UCUAcag -5'
15683 3' -57.3 NC_004065.1 + 58314 0.68 0.827828
Target:  5'- -gGUgGcGGCGGCGgcGGCGGAGGG-GUCg -3'
miRNA:   3'- agCAgU-CCGUCGC--CCGCCUUCUaCAG- -5'
15683 3' -57.3 NC_004065.1 + 157716 0.68 0.827828
Target:  5'- cCGUCGGGaCcGCGGucGCGGc-GAUGUCa -3'
miRNA:   3'- aGCAGUCC-GuCGCC--CGCCuuCUACAG- -5'
15683 3' -57.3 NC_004065.1 + 102795 0.69 0.811175
Target:  5'- -gGUCGGGC-GC-GGCGGGAGcguUGUCc -3'
miRNA:   3'- agCAGUCCGuCGcCCGCCUUCu--ACAG- -5'
15683 3' -57.3 NC_004065.1 + 8294 0.69 0.811175
Target:  5'- -gGUCuGGUAGuCGGGCGGAccgugGUCg -3'
miRNA:   3'- agCAGuCCGUC-GCCCGCCUucua-CAG- -5'
15683 3' -57.3 NC_004065.1 + 86390 0.69 0.785072
Target:  5'- cUCGUCAGGUGcGCGGaCGGGAcGGUGg- -3'
miRNA:   3'- -AGCAGUCCGU-CGCCcGCCUU-CUACag -5'
15683 3' -57.3 NC_004065.1 + 45023 0.69 0.785072
Target:  5'- aCGUuccCGGGC-GCGGGUaGAAGAUGUa -3'
miRNA:   3'- aGCA---GUCCGuCGCCCGcCUUCUACAg -5'
15683 3' -57.3 NC_004065.1 + 169720 0.69 0.767011
Target:  5'- cCGUC-GGCuGCGGGaCGGGAGAg--- -3'
miRNA:   3'- aGCAGuCCGuCGCCC-GCCUUCUacag -5'
15683 3' -57.3 NC_004065.1 + 99595 0.69 0.767011
Target:  5'- cUCGUCGGGCgAG-GaGGCGGAGGAg--- -3'
miRNA:   3'- -AGCAGUCCG-UCgC-CCGCCUUCUacag -5'
15683 3' -57.3 NC_004065.1 + 35605 0.7 0.728652
Target:  5'- gUGUCGgugcgggauccacGGCGGCGgcGGCGGcgGGGAUGUCa -3'
miRNA:   3'- aGCAGU-------------CCGUCGC--CCGCC--UUCUACAG- -5'
15683 3' -57.3 NC_004065.1 + 121476 0.71 0.700692
Target:  5'- -gGUCGGcGCGuccGCGGGCGuGAAGGUGg- -3'
miRNA:   3'- agCAGUC-CGU---CGCCCGC-CUUCUACag -5'
15683 3' -57.3 NC_004065.1 + 224521 0.71 0.681131
Target:  5'- aUGcCAGGCGcuggaucgugcuGCGGGCGaGAcguGGAUGUCg -3'
miRNA:   3'- aGCaGUCCGU------------CGCCCGC-CU---UCUACAG- -5'
15683 3' -57.3 NC_004065.1 + 222837 0.71 0.661419
Target:  5'- aUCGU--GGCAGCGGGCGaGGAGAc--- -3'
miRNA:   3'- -AGCAguCCGUCGCCCGC-CUUCUacag -5'
15683 3' -57.3 NC_004065.1 + 25729 0.72 0.649545
Target:  5'- cUCGUCGGGCGGCGGGaGGugcugcgcGUCu -3'
miRNA:   3'- -AGCAGUCCGUCGCCCgCCuucua---CAG- -5'
15683 3' -57.3 NC_004065.1 + 135712 0.72 0.621789
Target:  5'- aCGcCGGGCuGCGGGCGGGGaucuGGUGg- -3'
miRNA:   3'- aGCaGUCCGuCGCCCGCCUU----CUACag -5'
15683 3' -57.3 NC_004065.1 + 19127 0.73 0.543291
Target:  5'- uUCGggGGGgAGCGGGCGuGccGGGAUGUCg -3'
miRNA:   3'- -AGCagUCCgUCGCCCGC-C--UUCUACAG- -5'
15683 3' -57.3 NC_004065.1 + 53806 0.74 0.49307
Target:  5'- aUGUCGGGCAGa-GGCGGAggcaccgggacgguGGGUGUCc -3'
miRNA:   3'- aGCAGUCCGUCgcCCGCCU--------------UCUACAG- -5'
15683 3' -57.3 NC_004065.1 + 229652 0.75 0.450389
Target:  5'- cUCGUCAGGCGGCGGauGUGGguGAgugcGUCc -3'
miRNA:   3'- -AGCAGUCCGUCGCC--CGCCuuCUa---CAG- -5'
15683 3' -57.3 NC_004065.1 + 64197 0.91 0.048901
Target:  5'- gUCG-CAGGCGGCGGGCGGAGGcaGUGUCg -3'
miRNA:   3'- -AGCaGUCCGUCGCCCGCCUUC--UACAG- -5'
15683 3' -57.3 NC_004065.1 + 28765 1.09 0.003117
Target:  5'- cUCGUCAGGCAGCGGGCGGAAGAUGUCu -3'
miRNA:   3'- -AGCAGUCCGUCGCCCGCCUUCUACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.