miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15683 5' -57.6 NC_004065.1 + 53725 0.66 0.933344
Target:  5'- cCGGAGAgCUCgGCGGUCuugaaccuCUCGGGCa -3'
miRNA:   3'- -GUCUCUaGAG-CGCCGGcu------GAGCUCGc -5'
15683 5' -57.6 NC_004065.1 + 145216 0.66 0.933343
Target:  5'- gCAGGuGUCUcgugucCGCGGUCGACg-GGGCGg -3'
miRNA:   3'- -GUCUcUAGA------GCGCCGGCUGagCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 91693 0.66 0.933343
Target:  5'- gCAGAGcgacaUCGCGGCCacGAUguccgCGAGCu -3'
miRNA:   3'- -GUCUCuag--AGCGCCGG--CUGa----GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 74061 0.66 0.933343
Target:  5'- gCGGAGGagcuUCUCGaCGGauGACUCGcGCa -3'
miRNA:   3'- -GUCUCU----AGAGC-GCCggCUGAGCuCGc -5'
15683 5' -57.6 NC_004065.1 + 55793 0.66 0.931892
Target:  5'- gCAGGcGA--UCGCGGCUGACgaccaggucgucuaUCGAGCu -3'
miRNA:   3'- -GUCU-CUagAGCGCCGGCUG--------------AGCUCGc -5'
15683 5' -57.6 NC_004065.1 + 140542 0.66 0.926913
Target:  5'- aGGAGGcggcgucggcuuccUCUaGCGGCgGGCUgGAGUGg -3'
miRNA:   3'- gUCUCU--------------AGAgCGCCGgCUGAgCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 46823 0.66 0.923297
Target:  5'- aAGcAGAUCaUCGCGGCCGACgu--GUa -3'
miRNA:   3'- gUC-UCUAG-AGCGCCGGCUGagcuCGc -5'
15683 5' -57.6 NC_004065.1 + 123179 0.66 0.917945
Target:  5'- uGGGGAagcUgUCGCGGCUGA-UCGGcGCGg -3'
miRNA:   3'- gUCUCU---AgAGCGCCGGCUgAGCU-CGC- -5'
15683 5' -57.6 NC_004065.1 + 96613 0.66 0.916297
Target:  5'- gGGAGAUCugaccccuucguccUCGUcGCCGGCggucgCGAGCu -3'
miRNA:   3'- gUCUCUAG--------------AGCGcCGGCUGa----GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 113577 0.66 0.912376
Target:  5'- gUAGAucaucGAUCcCGCGuCCGGCgcgCGAGCGg -3'
miRNA:   3'- -GUCU-----CUAGaGCGCcGGCUGa--GCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 109851 0.66 0.911807
Target:  5'- cCGGGGGUCgagCGCGGCCuGAUaCGccgccaggagacaGGCGg -3'
miRNA:   3'- -GUCUCUAGa--GCGCCGG-CUGaGC-------------UCGC- -5'
15683 5' -57.6 NC_004065.1 + 208269 0.67 0.90659
Target:  5'- -cGAGGUCUCGauucaCGGUCGuuGgUCGAGCa -3'
miRNA:   3'- guCUCUAGAGC-----GCCGGC--UgAGCUCGc -5'
15683 5' -57.6 NC_004065.1 + 128206 0.67 0.90659
Target:  5'- aAGAGcAUCUUGUagugcacGCCGACgCGGGCGg -3'
miRNA:   3'- gUCUC-UAGAGCGc------CGGCUGaGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 109703 0.67 0.906589
Target:  5'- -cGAGAUCgCGCGGC-GACccUCGGGgGg -3'
miRNA:   3'- guCUCUAGaGCGCCGgCUG--AGCUCgC- -5'
15683 5' -57.6 NC_004065.1 + 25967 0.67 0.900588
Target:  5'- cUAGGGAUCcC-CGGCCGGCggcaUGAGCc -3'
miRNA:   3'- -GUCUCUAGaGcGCCGGCUGa---GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 162219 0.67 0.900588
Target:  5'- gAGAGAUCacucgUCGCGaGCgGucACUCGAcGCGa -3'
miRNA:   3'- gUCUCUAG-----AGCGC-CGgC--UGAGCU-CGC- -5'
15683 5' -57.6 NC_004065.1 + 24782 0.67 0.894374
Target:  5'- -cGGGuAUCUCGCGccagcgcauGCCGAUgcaGAGCGa -3'
miRNA:   3'- guCUC-UAGAGCGC---------CGGCUGag-CUCGC- -5'
15683 5' -57.6 NC_004065.1 + 43387 0.67 0.894374
Target:  5'- ----uGUCUucCGCGGCCGGCggucuucgCGAGCGc -3'
miRNA:   3'- gucucUAGA--GCGCCGGCUGa-------GCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 54730 0.67 0.891189
Target:  5'- aCGGAGGUggcugcgcgugcgCUCGCGGCaGACcgcgcgcgaacagCGAGCGa -3'
miRNA:   3'- -GUCUCUA-------------GAGCGCCGgCUGa------------GCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 26314 0.67 0.88132
Target:  5'- aCGGGGAaaaucggCUCGCGGuUCGACgccgCGuGCGa -3'
miRNA:   3'- -GUCUCUa------GAGCGCC-GGCUGa---GCuCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.