miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15683 5' -57.6 NC_004065.1 + 28730 1.09 0.003675
Target:  5'- cCAGAGAUCUCGCGGCCGACUCGAGCGa -3'
miRNA:   3'- -GUCUCUAGAGCGCCGGCUGAGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 201718 0.83 0.176115
Target:  5'- -cGGGAUCUCGCGGggagcguCCGGCUCGAGCc -3'
miRNA:   3'- guCUCUAGAGCGCC-------GGCUGAGCUCGc -5'
15683 5' -57.6 NC_004065.1 + 135589 0.75 0.505576
Target:  5'- ---uGAUCUCGCGGcCCcugaccuuggagggcGGCUCGAGCGg -3'
miRNA:   3'- gucuCUAGAGCGCC-GG---------------CUGAGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 93607 0.74 0.51115
Target:  5'- aCGGgcGGGUCUgGCcggcggcgGGCCGGCUCGAGCu -3'
miRNA:   3'- -GUC--UCUAGAgCG--------CCGGCUGAGCUCGc -5'
15683 5' -57.6 NC_004065.1 + 118734 0.74 0.529909
Target:  5'- cCGGcAGGUCUCGCaGUCGGCUCGGGg- -3'
miRNA:   3'- -GUC-UCUAGAGCGcCGGCUGAGCUCgc -5'
15683 5' -57.6 NC_004065.1 + 74781 0.73 0.597239
Target:  5'- gCAGGGAgUCUCGCGGCagcGCUCGcGCa -3'
miRNA:   3'- -GUCUCU-AGAGCGCCGgc-UGAGCuCGc -5'
15683 5' -57.6 NC_004065.1 + 113763 0.73 0.597239
Target:  5'- gAGGGAcagCGCGGCggcagacgacCGACUCGGGCGg -3'
miRNA:   3'- gUCUCUagaGCGCCG----------GCUGAGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 101272 0.73 0.59724
Target:  5'- -cGAGGaaucgcgcCUgGCGGCCGACUCGuGCGu -3'
miRNA:   3'- guCUCUa-------GAgCGCCGGCUGAGCuCGC- -5'
15683 5' -57.6 NC_004065.1 + 65010 0.72 0.616776
Target:  5'- uCGGAGcgCUCcuUGGCCGACagCGAGCGc -3'
miRNA:   3'- -GUCUCuaGAGc-GCCGGCUGa-GCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 50529 0.72 0.616776
Target:  5'- aCGGcGGUCUCGgGGcCCGAaUCGGGCGu -3'
miRNA:   3'- -GUCuCUAGAGCgCC-GGCUgAGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 71856 0.71 0.713956
Target:  5'- gAGGGAUCcggaaagCGCGGCCGAC-C-AGCGc -3'
miRNA:   3'- gUCUCUAGa------GCGCCGGCUGaGcUCGC- -5'
15683 5' -57.6 NC_004065.1 + 124742 0.71 0.713957
Target:  5'- uGGAGAUCcgCGCGGCCcugGACccggCGcAGCGg -3'
miRNA:   3'- gUCUCUAGa-GCGCCGG---CUGa---GC-UCGC- -5'
15683 5' -57.6 NC_004065.1 + 75197 0.71 0.724398
Target:  5'- -cGAGAUCUCGCGGaCGAUggacuugacgagggcCGAGCa -3'
miRNA:   3'- guCUCUAGAGCGCCgGCUGa--------------GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 142656 0.7 0.732876
Target:  5'- uCAGGGAgUUCGUGGCCGAggggCGAGgGg -3'
miRNA:   3'- -GUCUCUaGAGCGCCGGCUga--GCUCgC- -5'
15683 5' -57.6 NC_004065.1 + 71810 0.7 0.74222
Target:  5'- uCGGAGAUCUCGaGGUaCGACauacgCGAGCu -3'
miRNA:   3'- -GUCUCUAGAGCgCCG-GCUGa----GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 120539 0.7 0.76879
Target:  5'- gAG-GGUCUCcggugugccggcgGCGGUCGGCgCGAGCGg -3'
miRNA:   3'- gUCuCUAGAG-------------CGCCGGCUGaGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 113918 0.69 0.804711
Target:  5'- gCGGAGAUCgCGCGuGUCGACgacgCG-GCGc -3'
miRNA:   3'- -GUCUCUAGaGCGC-CGGCUGa---GCuCGC- -5'
15683 5' -57.6 NC_004065.1 + 76687 0.69 0.824657
Target:  5'- gCAGGGAaacgaccgacugaUCG-GGUCGGCUCGGGCGg -3'
miRNA:   3'- -GUCUCUag-----------AGCgCCGGCUGAGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 78650 0.68 0.840577
Target:  5'- aAGAGAUCggccgccagcgcaGCGGCCGGCgccgCG-GCGc -3'
miRNA:   3'- gUCUCUAGag-----------CGCCGGCUGa---GCuCGC- -5'
15683 5' -57.6 NC_004065.1 + 142333 0.68 0.860231
Target:  5'- -cGAGGUCUCGaacGCCGGCggcgaGAGCa -3'
miRNA:   3'- guCUCUAGAGCgc-CGGCUGag---CUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.