Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 93607 | 0.74 | 0.51115 |
Target: 5'- aCGGgcGGGUCUgGCcggcggcgGGCCGGCUCGAGCu -3' miRNA: 3'- -GUC--UCUAGAgCG--------CCGGCUGAGCUCGc -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 135589 | 0.75 | 0.505576 |
Target: 5'- ---uGAUCUCGCGGcCCcugaccuuggagggcGGCUCGAGCGg -3' miRNA: 3'- gucuCUAGAGCGCC-GG---------------CUGAGCUCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 201718 | 0.83 | 0.176115 |
Target: 5'- -cGGGAUCUCGCGGggagcguCCGGCUCGAGCc -3' miRNA: 3'- guCUCUAGAGCGCC-------GGCUGAGCUCGc -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 28730 | 1.09 | 0.003675 |
Target: 5'- cCAGAGAUCUCGCGGCCGACUCGAGCGa -3' miRNA: 3'- -GUCUCUAGAGCGCCGGCUGAGCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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