miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15683 5' -57.6 NC_004065.1 + 23441 0.67 0.874487
Target:  5'- -cGGGAUCggCGgGGCCGACcugcUCGAGa- -3'
miRNA:   3'- guCUCUAGa-GCgCCGGCUG----AGCUCgc -5'
15683 5' -57.6 NC_004065.1 + 24782 0.67 0.894374
Target:  5'- -cGGGuAUCUCGCGccagcgcauGCCGAUgcaGAGCGa -3'
miRNA:   3'- guCUC-UAGAGCGC---------CGGCUGag-CUCGC- -5'
15683 5' -57.6 NC_004065.1 + 25967 0.67 0.900588
Target:  5'- cUAGGGAUCcC-CGGCCGGCggcaUGAGCc -3'
miRNA:   3'- -GUCUCUAGaGcGCCGGCUGa---GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 26314 0.67 0.88132
Target:  5'- aCGGGGAaaaucggCUCGCGGuUCGACgccgCGuGCGa -3'
miRNA:   3'- -GUCUCUa------GAGCGCC-GGCUGa---GCuCGC- -5'
15683 5' -57.6 NC_004065.1 + 28730 1.09 0.003675
Target:  5'- cCAGAGAUCUCGCGGCCGACUCGAGCGa -3'
miRNA:   3'- -GUCUCUAGAGCGCCGGCUGAGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 43387 0.67 0.894374
Target:  5'- ----uGUCUucCGCGGCCGGCggucuucgCGAGCGc -3'
miRNA:   3'- gucucUAGA--GCGCCGGCUGa-------GCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 46823 0.66 0.923297
Target:  5'- aAGcAGAUCaUCGCGGCCGACgu--GUa -3'
miRNA:   3'- gUC-UCUAG-AGCGCCGGCUGagcuCGc -5'
15683 5' -57.6 NC_004065.1 + 50529 0.72 0.616776
Target:  5'- aCGGcGGUCUCGgGGcCCGAaUCGGGCGu -3'
miRNA:   3'- -GUCuCUAGAGCgCC-GGCUgAGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 53725 0.66 0.933344
Target:  5'- cCGGAGAgCUCgGCGGUCuugaaccuCUCGGGCa -3'
miRNA:   3'- -GUCUCUaGAG-CGCCGGcu------GAGCUCGc -5'
15683 5' -57.6 NC_004065.1 + 54730 0.67 0.891189
Target:  5'- aCGGAGGUggcugcgcgugcgCUCGCGGCaGACcgcgcgcgaacagCGAGCGa -3'
miRNA:   3'- -GUCUCUA-------------GAGCGCCGgCUGa------------GCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 55793 0.66 0.931892
Target:  5'- gCAGGcGA--UCGCGGCUGACgaccaggucgucuaUCGAGCu -3'
miRNA:   3'- -GUCU-CUagAGCGCCGGCUG--------------AGCUCGc -5'
15683 5' -57.6 NC_004065.1 + 65010 0.72 0.616776
Target:  5'- uCGGAGcgCUCcuUGGCCGACagCGAGCGc -3'
miRNA:   3'- -GUCUCuaGAGc-GCCGGCUGa-GCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 71810 0.7 0.74222
Target:  5'- uCGGAGAUCUCGaGGUaCGACauacgCGAGCu -3'
miRNA:   3'- -GUCUCUAGAGCgCCG-GCUGa----GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 71856 0.71 0.713956
Target:  5'- gAGGGAUCcggaaagCGCGGCCGAC-C-AGCGc -3'
miRNA:   3'- gUCUCUAGa------GCGCCGGCUGaGcUCGC- -5'
15683 5' -57.6 NC_004065.1 + 74061 0.66 0.933343
Target:  5'- gCGGAGGagcuUCUCGaCGGauGACUCGcGCa -3'
miRNA:   3'- -GUCUCU----AGAGC-GCCggCUGAGCuCGc -5'
15683 5' -57.6 NC_004065.1 + 74781 0.73 0.597239
Target:  5'- gCAGGGAgUCUCGCGGCagcGCUCGcGCa -3'
miRNA:   3'- -GUCUCU-AGAGCGCCGgc-UGAGCuCGc -5'
15683 5' -57.6 NC_004065.1 + 75197 0.71 0.724398
Target:  5'- -cGAGAUCUCGCGGaCGAUggacuugacgagggcCGAGCa -3'
miRNA:   3'- guCUCUAGAGCGCCgGCUGa--------------GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 76687 0.69 0.824657
Target:  5'- gCAGGGAaacgaccgacugaUCG-GGUCGGCUCGGGCGg -3'
miRNA:   3'- -GUCUCUag-----------AGCgCCGGCUGAGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 78650 0.68 0.840577
Target:  5'- aAGAGAUCggccgccagcgcaGCGGCCGGCgccgCG-GCGc -3'
miRNA:   3'- gUCUCUAGag-----------CGCCGGCUGa---GCuCGC- -5'
15683 5' -57.6 NC_004065.1 + 91693 0.66 0.933343
Target:  5'- gCAGAGcgacaUCGCGGCCacGAUguccgCGAGCu -3'
miRNA:   3'- -GUCUCuag--AGCGCCGG--CUGa----GCUCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.