miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15683 5' -57.6 NC_004065.1 + 93607 0.74 0.51115
Target:  5'- aCGGgcGGGUCUgGCcggcggcgGGCCGGCUCGAGCu -3'
miRNA:   3'- -GUC--UCUAGAgCG--------CCGGCUGAGCUCGc -5'
15683 5' -57.6 NC_004065.1 + 95036 0.67 0.874487
Target:  5'- uGGGGA-CUCGgGGUgGGCUgGGGUGg -3'
miRNA:   3'- gUCUCUaGAGCgCCGgCUGAgCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 96613 0.66 0.916297
Target:  5'- gGGAGAUCugaccccuucguccUCGUcGCCGGCggucgCGAGCu -3'
miRNA:   3'- gUCUCUAG--------------AGCGcCGGCUGa----GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 101272 0.73 0.59724
Target:  5'- -cGAGGaaucgcgcCUgGCGGCCGACUCGuGCGu -3'
miRNA:   3'- guCUCUa-------GAgCGCCGGCUGAGCuCGC- -5'
15683 5' -57.6 NC_004065.1 + 109703 0.67 0.906589
Target:  5'- -cGAGAUCgCGCGGC-GACccUCGGGgGg -3'
miRNA:   3'- guCUCUAGaGCGCCGgCUG--AGCUCgC- -5'
15683 5' -57.6 NC_004065.1 + 109851 0.66 0.911807
Target:  5'- cCGGGGGUCgagCGCGGCCuGAUaCGccgccaggagacaGGCGg -3'
miRNA:   3'- -GUCUCUAGa--GCGCCGG-CUGaGC-------------UCGC- -5'
15683 5' -57.6 NC_004065.1 + 113577 0.66 0.912376
Target:  5'- gUAGAucaucGAUCcCGCGuCCGGCgcgCGAGCGg -3'
miRNA:   3'- -GUCU-----CUAGaGCGCcGGCUGa--GCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 113763 0.73 0.597239
Target:  5'- gAGGGAcagCGCGGCggcagacgacCGACUCGGGCGg -3'
miRNA:   3'- gUCUCUagaGCGCCG----------GCUGAGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 113918 0.69 0.804711
Target:  5'- gCGGAGAUCgCGCGuGUCGACgacgCG-GCGc -3'
miRNA:   3'- -GUCUCUAGaGCGC-CGGCUGa---GCuCGC- -5'
15683 5' -57.6 NC_004065.1 + 118734 0.74 0.529909
Target:  5'- cCGGcAGGUCUCGCaGUCGGCUCGGGg- -3'
miRNA:   3'- -GUC-UCUAGAGCGcCGGCUGAGCUCgc -5'
15683 5' -57.6 NC_004065.1 + 120539 0.7 0.76879
Target:  5'- gAG-GGUCUCcggugugccggcgGCGGUCGGCgCGAGCGg -3'
miRNA:   3'- gUCuCUAGAG-------------CGCCGGCUGaGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 123179 0.66 0.917945
Target:  5'- uGGGGAagcUgUCGCGGCUGA-UCGGcGCGg -3'
miRNA:   3'- gUCUCU---AgAGCGCCGGCUgAGCU-CGC- -5'
15683 5' -57.6 NC_004065.1 + 124742 0.71 0.713957
Target:  5'- uGGAGAUCcgCGCGGCCcugGACccggCGcAGCGg -3'
miRNA:   3'- gUCUCUAGa-GCGCCGG---CUGa---GC-UCGC- -5'
15683 5' -57.6 NC_004065.1 + 128206 0.67 0.90659
Target:  5'- aAGAGcAUCUUGUagugcacGCCGACgCGGGCGg -3'
miRNA:   3'- gUCUC-UAGAGCGc------CGGCUGaGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 135589 0.75 0.505576
Target:  5'- ---uGAUCUCGCGGcCCcugaccuuggagggcGGCUCGAGCGg -3'
miRNA:   3'- gucuCUAGAGCGCC-GG---------------CUGAGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 140133 0.67 0.88132
Target:  5'- aGGAGAUUgguguUCGgGGCCGACgauGGCGc -3'
miRNA:   3'- gUCUCUAG-----AGCgCCGGCUGagcUCGC- -5'
15683 5' -57.6 NC_004065.1 + 140542 0.66 0.926913
Target:  5'- aGGAGGcggcgucggcuuccUCUaGCGGCgGGCUgGAGUGg -3'
miRNA:   3'- gUCUCU--------------AGAgCGCCGgCUGAgCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 142333 0.68 0.860231
Target:  5'- -cGAGGUCUCGaacGCCGGCggcgaGAGCa -3'
miRNA:   3'- guCUCUAGAGCgc-CGGCUGag---CUCGc -5'
15683 5' -57.6 NC_004065.1 + 142571 0.68 0.860231
Target:  5'- -cGAGAcCUCGCGGUCGACgaUCGAc-- -3'
miRNA:   3'- guCUCUaGAGCGCCGGCUG--AGCUcgc -5'
15683 5' -57.6 NC_004065.1 + 142656 0.7 0.732876
Target:  5'- uCAGGGAgUUCGUGGCCGAggggCGAGgGg -3'
miRNA:   3'- -GUCUCUaGAGCGCCGGCUga--GCUCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.