miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15683 5' -57.6 NC_004065.1 + 91693 0.66 0.933343
Target:  5'- gCAGAGcgacaUCGCGGCCacGAUguccgCGAGCu -3'
miRNA:   3'- -GUCUCuag--AGCGCCGG--CUGa----GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 140133 0.67 0.88132
Target:  5'- aGGAGAUUgguguUCGgGGCCGACgauGGCGc -3'
miRNA:   3'- gUCUCUAG-----AGCgCCGGCUGagcUCGC- -5'
15683 5' -57.6 NC_004065.1 + 24782 0.67 0.894374
Target:  5'- -cGGGuAUCUCGCGccagcgcauGCCGAUgcaGAGCGa -3'
miRNA:   3'- guCUC-UAGAGCGC---------CGGCUGag-CUCGC- -5'
15683 5' -57.6 NC_004065.1 + 25967 0.67 0.900588
Target:  5'- cUAGGGAUCcC-CGGCCGGCggcaUGAGCc -3'
miRNA:   3'- -GUCUCUAGaGcGCCGGCUGa---GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 109703 0.67 0.906589
Target:  5'- -cGAGAUCgCGCGGC-GACccUCGGGgGg -3'
miRNA:   3'- guCUCUAGaGCGCCGgCUG--AGCUCgC- -5'
15683 5' -57.6 NC_004065.1 + 96613 0.66 0.916297
Target:  5'- gGGAGAUCugaccccuucguccUCGUcGCCGGCggucgCGAGCu -3'
miRNA:   3'- gUCUCUAG--------------AGCGcCGGCUGa----GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 46823 0.66 0.923297
Target:  5'- aAGcAGAUCaUCGCGGCCGACgu--GUa -3'
miRNA:   3'- gUC-UCUAG-AGCGCCGGCUGagcuCGc -5'
15683 5' -57.6 NC_004065.1 + 140542 0.66 0.926913
Target:  5'- aGGAGGcggcgucggcuuccUCUaGCGGCgGGCUgGAGUGg -3'
miRNA:   3'- gUCUCU--------------AGAgCGCCGgCUGAgCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 55793 0.66 0.931892
Target:  5'- gCAGGcGA--UCGCGGCUGACgaccaggucgucuaUCGAGCu -3'
miRNA:   3'- -GUCU-CUagAGCGCCGGCUG--------------AGCUCGc -5'
15683 5' -57.6 NC_004065.1 + 95036 0.67 0.874487
Target:  5'- uGGGGA-CUCGgGGUgGGCUgGGGUGg -3'
miRNA:   3'- gUCUCUaGAGCgCCGgCUGAgCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 142333 0.68 0.860231
Target:  5'- -cGAGGUCUCGaacGCCGGCggcgaGAGCa -3'
miRNA:   3'- guCUCUAGAGCgc-CGGCUGag---CUCGc -5'
15683 5' -57.6 NC_004065.1 + 78650 0.68 0.840577
Target:  5'- aAGAGAUCggccgccagcgcaGCGGCCGGCgccgCG-GCGc -3'
miRNA:   3'- gUCUCUAGag-----------CGCCGGCUGa---GCuCGC- -5'
15683 5' -57.6 NC_004065.1 + 74781 0.73 0.597239
Target:  5'- gCAGGGAgUCUCGCGGCagcGCUCGcGCa -3'
miRNA:   3'- -GUCUCU-AGAGCGCCGgc-UGAGCuCGc -5'
15683 5' -57.6 NC_004065.1 + 113763 0.73 0.597239
Target:  5'- gAGGGAcagCGCGGCggcagacgacCGACUCGGGCGg -3'
miRNA:   3'- gUCUCUagaGCGCCG----------GCUGAGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 71856 0.71 0.713956
Target:  5'- gAGGGAUCcggaaagCGCGGCCGAC-C-AGCGc -3'
miRNA:   3'- gUCUCUAGa------GCGCCGGCUGaGcUCGC- -5'
15683 5' -57.6 NC_004065.1 + 75197 0.71 0.724398
Target:  5'- -cGAGAUCUCGCGGaCGAUggacuugacgagggcCGAGCa -3'
miRNA:   3'- guCUCUAGAGCGCCgGCUGa--------------GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 142656 0.7 0.732876
Target:  5'- uCAGGGAgUUCGUGGCCGAggggCGAGgGg -3'
miRNA:   3'- -GUCUCUaGAGCGCCGGCUga--GCUCgC- -5'
15683 5' -57.6 NC_004065.1 + 71810 0.7 0.74222
Target:  5'- uCGGAGAUCUCGaGGUaCGACauacgCGAGCu -3'
miRNA:   3'- -GUCUCUAGAGCgCCG-GCUGa----GCUCGc -5'
15683 5' -57.6 NC_004065.1 + 120539 0.7 0.76879
Target:  5'- gAG-GGUCUCcggugugccggcgGCGGUCGGCgCGAGCGg -3'
miRNA:   3'- gUCuCUAGAG-------------CGCCGGCUGaGCUCGC- -5'
15683 5' -57.6 NC_004065.1 + 113918 0.69 0.804711
Target:  5'- gCGGAGAUCgCGCGuGUCGACgacgCG-GCGc -3'
miRNA:   3'- -GUCUCUAGaGCGC-CGGCUGa---GCuCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.