Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 120539 | 0.7 | 0.76879 |
Target: 5'- gAG-GGUCUCcggugugccggcgGCGGUCGGCgCGAGCGg -3' miRNA: 3'- gUCuCUAGAG-------------CGCCGGCUGaGCUCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 113918 | 0.69 | 0.804711 |
Target: 5'- gCGGAGAUCgCGCGuGUCGACgacgCG-GCGc -3' miRNA: 3'- -GUCUCUAGaGCGC-CGGCUGa---GCuCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 78650 | 0.68 | 0.840577 |
Target: 5'- aAGAGAUCggccgccagcgcaGCGGCCGGCgccgCG-GCGc -3' miRNA: 3'- gUCUCUAGag-----------CGCCGGCUGa---GCuCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 23441 | 0.67 | 0.874487 |
Target: 5'- -cGGGAUCggCGgGGCCGACcugcUCGAGa- -3' miRNA: 3'- guCUCUAGa-GCgCCGGCUG----AGCUCgc -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 26314 | 0.67 | 0.88132 |
Target: 5'- aCGGGGAaaaucggCUCGCGGuUCGACgccgCGuGCGa -3' miRNA: 3'- -GUCUCUa------GAGCGCC-GGCUGa---GCuCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 54730 | 0.67 | 0.891189 |
Target: 5'- aCGGAGGUggcugcgcgugcgCUCGCGGCaGACcgcgcgcgaacagCGAGCGa -3' miRNA: 3'- -GUCUCUA-------------GAGCGCCGgCUGa------------GCUCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 43387 | 0.67 | 0.894374 |
Target: 5'- ----uGUCUucCGCGGCCGGCggucuucgCGAGCGc -3' miRNA: 3'- gucucUAGA--GCGCCGGCUGa-------GCUCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 162219 | 0.67 | 0.900588 |
Target: 5'- gAGAGAUCacucgUCGCGaGCgGucACUCGAcGCGa -3' miRNA: 3'- gUCUCUAG-----AGCGC-CGgC--UGAGCU-CGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 208269 | 0.67 | 0.90659 |
Target: 5'- -cGAGGUCUCGauucaCGGUCGuuGgUCGAGCa -3' miRNA: 3'- guCUCUAGAGC-----GCCGGC--UgAGCUCGc -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 128206 | 0.67 | 0.90659 |
Target: 5'- aAGAGcAUCUUGUagugcacGCCGACgCGGGCGg -3' miRNA: 3'- gUCUC-UAGAGCGc------CGGCUGaGCUCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 142571 | 0.68 | 0.860231 |
Target: 5'- -cGAGAcCUCGCGGUCGACgaUCGAc-- -3' miRNA: 3'- guCUCUaGAGCGCCGGCUG--AGCUcgc -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 76687 | 0.69 | 0.824657 |
Target: 5'- gCAGGGAaacgaccgacugaUCG-GGUCGGCUCGGGCGg -3' miRNA: 3'- -GUCUCUag-----------AGCgCCGGCUGAGCUCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 124742 | 0.71 | 0.713957 |
Target: 5'- uGGAGAUCcgCGCGGCCcugGACccggCGcAGCGg -3' miRNA: 3'- gUCUCUAGa-GCGCCGG---CUGa---GC-UCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 50529 | 0.72 | 0.616776 |
Target: 5'- aCGGcGGUCUCGgGGcCCGAaUCGGGCGu -3' miRNA: 3'- -GUCuCUAGAGCgCC-GGCUgAGCUCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 65010 | 0.72 | 0.616776 |
Target: 5'- uCGGAGcgCUCcuUGGCCGACagCGAGCGc -3' miRNA: 3'- -GUCUCuaGAGc-GCCGGCUGa-GCUCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 101272 | 0.73 | 0.59724 |
Target: 5'- -cGAGGaaucgcgcCUgGCGGCCGACUCGuGCGu -3' miRNA: 3'- guCUCUa-------GAgCGCCGGCUGAGCuCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 93607 | 0.74 | 0.51115 |
Target: 5'- aCGGgcGGGUCUgGCcggcggcgGGCCGGCUCGAGCu -3' miRNA: 3'- -GUC--UCUAGAgCG--------CCGGCUGAGCUCGc -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 135589 | 0.75 | 0.505576 |
Target: 5'- ---uGAUCUCGCGGcCCcugaccuuggagggcGGCUCGAGCGg -3' miRNA: 3'- gucuCUAGAGCGCC-GG---------------CUGAGCUCGC- -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 201718 | 0.83 | 0.176115 |
Target: 5'- -cGGGAUCUCGCGGggagcguCCGGCUCGAGCc -3' miRNA: 3'- guCUCUAGAGCGCC-------GGCUGAGCUCGc -5' |
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15683 | 5' | -57.6 | NC_004065.1 | + | 53725 | 0.66 | 0.933344 |
Target: 5'- cCGGAGAgCUCgGCGGUCuugaaccuCUCGGGCa -3' miRNA: 3'- -GUCUCUaGAG-CGCCGGcu------GAGCUCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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