Results 21 - 40 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 28730 | 1.09 | 0.003675 |
Target: 5'- cCAGAGAUCUCGCGGCCGACUCGAGCGa -3' miRNA: 3'- -GUCUCUAGAGCGCCGGCUGAGCUCGC- -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 109703 | 0.67 | 0.906589 |
Target: 5'- -cGAGAUCgCGCGGC-GACccUCGGGgGg -3' miRNA: 3'- guCUCUAGaGCGCCGgCUG--AGCUCgC- -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 142656 | 0.7 | 0.732876 |
Target: 5'- uCAGGGAgUUCGUGGCCGAggggCGAGgGg -3' miRNA: 3'- -GUCUCUaGAGCGCCGGCUga--GCUCgC- -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 74061 | 0.66 | 0.933343 |
Target: 5'- gCGGAGGagcuUCUCGaCGGauGACUCGcGCa -3' miRNA: 3'- -GUCUCU----AGAGC-GCCggCUGAGCuCGc -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 75197 | 0.71 | 0.724398 |
Target: 5'- -cGAGAUCUCGCGGaCGAUggacuugacgagggcCGAGCa -3' miRNA: 3'- guCUCUAGAGCGCCgGCUGa--------------GCUCGc -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 71810 | 0.7 | 0.74222 |
Target: 5'- uCGGAGAUCUCGaGGUaCGACauacgCGAGCu -3' miRNA: 3'- -GUCUCUAGAGCgCCG-GCUGa----GCUCGc -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 120539 | 0.7 | 0.76879 |
Target: 5'- gAG-GGUCUCcggugugccggcgGCGGUCGGCgCGAGCGg -3' miRNA: 3'- gUCuCUAGAG-------------CGCCGGCUGaGCUCGC- -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 113918 | 0.69 | 0.804711 |
Target: 5'- gCGGAGAUCgCGCGuGUCGACgacgCG-GCGc -3' miRNA: 3'- -GUCUCUAGaGCGC-CGGCUGa---GCuCGC- -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 78650 | 0.68 | 0.840577 |
Target: 5'- aAGAGAUCggccgccagcgcaGCGGCCGGCgccgCG-GCGc -3' miRNA: 3'- gUCUCUAGag-----------CGCCGGCUGa---GCuCGC- -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 142333 | 0.68 | 0.860231 |
Target: 5'- -cGAGGUCUCGaacGCCGGCggcgaGAGCa -3' miRNA: 3'- guCUCUAGAGCgc-CGGCUGag---CUCGc -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 95036 | 0.67 | 0.874487 |
Target: 5'- uGGGGA-CUCGgGGUgGGCUgGGGUGg -3' miRNA: 3'- gUCUCUaGAGCgCCGgCUGAgCUCGC- -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 140133 | 0.67 | 0.88132 |
Target: 5'- aGGAGAUUgguguUCGgGGCCGACgauGGCGc -3' miRNA: 3'- gUCUCUAG-----AGCgCCGGCUGagcUCGC- -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 24782 | 0.67 | 0.894374 |
Target: 5'- -cGGGuAUCUCGCGccagcgcauGCCGAUgcaGAGCGa -3' miRNA: 3'- guCUC-UAGAGCGC---------CGGCUGag-CUCGC- -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 25967 | 0.67 | 0.900588 |
Target: 5'- cUAGGGAUCcC-CGGCCGGCggcaUGAGCc -3' miRNA: 3'- -GUCUCUAGaGcGCCGGCUGa---GCUCGc -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 96613 | 0.66 | 0.916297 |
Target: 5'- gGGAGAUCugaccccuucguccUCGUcGCCGGCggucgCGAGCu -3' miRNA: 3'- gUCUCUAG--------------AGCGcCGGCUGa----GCUCGc -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 46823 | 0.66 | 0.923297 |
Target: 5'- aAGcAGAUCaUCGCGGCCGACgu--GUa -3' miRNA: 3'- gUC-UCUAG-AGCGCCGGCUGagcuCGc -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 140542 | 0.66 | 0.926913 |
Target: 5'- aGGAGGcggcgucggcuuccUCUaGCGGCgGGCUgGAGUGg -3' miRNA: 3'- gUCUCU--------------AGAgCGCCGgCUGAgCUCGC- -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 55793 | 0.66 | 0.931892 |
Target: 5'- gCAGGcGA--UCGCGGCUGACgaccaggucgucuaUCGAGCu -3' miRNA: 3'- -GUCU-CUagAGCGCCGGCUG--------------AGCUCGc -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 91693 | 0.66 | 0.933343 |
Target: 5'- gCAGAGcgacaUCGCGGCCacGAUguccgCGAGCu -3' miRNA: 3'- -GUCUCuag--AGCGCCGG--CUGa----GCUCGc -5' |
|||||||
15683 | 5' | -57.6 | NC_004065.1 | + | 145216 | 0.66 | 0.933343 |
Target: 5'- gCAGGuGUCUcgugucCGCGGUCGACg-GGGCGg -3' miRNA: 3'- -GUCUcUAGA------GCGCCGGCUGagCUCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home