miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15684 3' -59 NC_004065.1 + 29333 0.66 0.900038
Target:  5'- aCGGCCgcgaaguagaCCAuGGUGUCagaaCCGCGUCc -3'
miRNA:   3'- gGCCGGag--------GGU-UCACAGg---GGUGCAGu -5'
15684 3' -59 NC_004065.1 + 33241 0.66 0.900038
Target:  5'- aCCGGCCuggUCCgCGAGg--CCUC-CGUCAu -3'
miRNA:   3'- -GGCCGG---AGG-GUUCacaGGGGuGCAGU- -5'
15684 3' -59 NC_004065.1 + 120874 0.66 0.900038
Target:  5'- aCCGGCUUgCCCGGG-GUCagggCgGCGUCu -3'
miRNA:   3'- -GGCCGGA-GGGUUCaCAGg---GgUGCAGu -5'
15684 3' -59 NC_004065.1 + 50343 0.66 0.900038
Target:  5'- gUGGCCaccgccgcgaUCCCGAGcccCCCCGCuGUCAu -3'
miRNA:   3'- gGCCGG----------AGGGUUCacaGGGGUG-CAGU- -5'
15684 3' -59 NC_004065.1 + 61311 0.66 0.893879
Target:  5'- aCGGCCUCUC-GGUGUCCgucagCGCGgCGg -3'
miRNA:   3'- gGCCGGAGGGuUCACAGGg----GUGCaGU- -5'
15684 3' -59 NC_004065.1 + 140387 0.66 0.893879
Target:  5'- gUCGGUCgCCC-GGUGUCCCC-UGUg- -3'
miRNA:   3'- -GGCCGGaGGGuUCACAGGGGuGCAgu -5'
15684 3' -59 NC_004065.1 + 91292 0.66 0.893252
Target:  5'- aCGGCCUCUUcgggacaggggauGAGcUG-CCCCGCGUa- -3'
miRNA:   3'- gGCCGGAGGG-------------UUC-ACaGGGGUGCAgu -5'
15684 3' -59 NC_004065.1 + 70730 0.66 0.889446
Target:  5'- aCGGUgUCCCugaacgccgccgugaAGGUGUCCUcggguuugaucguCACGUCGu -3'
miRNA:   3'- gGCCGgAGGG---------------UUCACAGGG-------------GUGCAGU- -5'
15684 3' -59 NC_004065.1 + 121820 0.66 0.880951
Target:  5'- uCCGGCUgagUCCgCAGGcG-CCCUGCGUCc -3'
miRNA:   3'- -GGCCGG---AGG-GUUCaCaGGGGUGCAGu -5'
15684 3' -59 NC_004065.1 + 147204 0.66 0.880951
Target:  5'- uCCGGCUUCCCcgacgagcagAAGUacuUCCCCACccccggauggGUCGg -3'
miRNA:   3'- -GGCCGGAGGG----------UUCAc--AGGGGUG----------CAGU- -5'
15684 3' -59 NC_004065.1 + 119782 0.66 0.874188
Target:  5'- cCUGGCC-CUCGAccacGUCCCCGCGcCGc -3'
miRNA:   3'- -GGCCGGaGGGUUca--CAGGGGUGCaGU- -5'
15684 3' -59 NC_004065.1 + 18235 0.66 0.867232
Target:  5'- cCCGcGCCUCUCcgGAGUcGUCUCCcgacuggagGCGUCGc -3'
miRNA:   3'- -GGC-CGGAGGG--UUCA-CAGGGG---------UGCAGU- -5'
15684 3' -59 NC_004065.1 + 117344 0.66 0.867232
Target:  5'- cCCGGCUUgUCGGG-GUCCgC-CGUCAg -3'
miRNA:   3'- -GGCCGGAgGGUUCaCAGGgGuGCAGU- -5'
15684 3' -59 NC_004065.1 + 151823 0.67 0.852757
Target:  5'- cCCGGuCCUCuCCGAGUacugcgacGUCgCCCACaacuggGUCAu -3'
miRNA:   3'- -GGCC-GGAG-GGUUCA--------CAG-GGGUG------CAGU- -5'
15684 3' -59 NC_004065.1 + 75078 0.67 0.84525
Target:  5'- cUCGGUCccgaCCCGGGcGUCUCCACGcUCGu -3'
miRNA:   3'- -GGCCGGa---GGGUUCaCAGGGGUGC-AGU- -5'
15684 3' -59 NC_004065.1 + 148319 0.68 0.80524
Target:  5'- cUCGGCCgccaggucgCCCAcGGUGUCgccguCCUugGUCAc -3'
miRNA:   3'- -GGCCGGa--------GGGU-UCACAG-----GGGugCAGU- -5'
15684 3' -59 NC_004065.1 + 62885 0.69 0.752695
Target:  5'- gCUGGCCUCCC---UG-CCCguCGUCAg -3'
miRNA:   3'- -GGCCGGAGGGuucACaGGGguGCAGU- -5'
15684 3' -59 NC_004065.1 + 108204 0.69 0.752695
Target:  5'- aCCGcGUCUaCCAGGUG-CCCCGCuGUCu -3'
miRNA:   3'- -GGC-CGGAgGGUUCACaGGGGUG-CAGu -5'
15684 3' -59 NC_004065.1 + 24690 0.7 0.715665
Target:  5'- gCCaGCCUCCCGAG-GUCU--ACGUCGg -3'
miRNA:   3'- -GGcCGGAGGGUUCaCAGGggUGCAGU- -5'
15684 3' -59 NC_004065.1 + 139830 0.7 0.715665
Target:  5'- gCGGCCaccUCCCGAGUGcUCUgCGCG-CAu -3'
miRNA:   3'- gGCCGG---AGGGUUCAC-AGGgGUGCaGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.