miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15684 5' -53.1 NC_004065.1 + 178691 0.66 0.991417
Target:  5'- gCACAGGACAcucauAUCUgCUGcUGGGGGc- -3'
miRNA:   3'- -GUGUCCUGUuc---UAGA-GAC-ACCCCUcu -5'
15684 5' -53.1 NC_004065.1 + 174201 0.66 0.988905
Target:  5'- aCGCGGGACGAuGGUCUgUGgaaGGGAc- -3'
miRNA:   3'- -GUGUCCUGUU-CUAGAgACac-CCCUcu -5'
15684 5' -53.1 NC_004065.1 + 115589 0.66 0.988905
Target:  5'- --gGGGAaauCAGGGUUguagaUGUGGGGGGAu -3'
miRNA:   3'- gugUCCU---GUUCUAGag---ACACCCCUCU- -5'
15684 5' -53.1 NC_004065.1 + 119149 0.66 0.985855
Target:  5'- --aAGGACAuggAGGUCUCgGUGGagaccgccaucGGAGAg -3'
miRNA:   3'- gugUCCUGU---UCUAGAGaCACC-----------CCUCU- -5'
15684 5' -53.1 NC_004065.1 + 127638 0.67 0.9822
Target:  5'- gGCGGGaguccucgaacgGCGAGAUCUCUc-GGGuGAGAu -3'
miRNA:   3'- gUGUCC------------UGUUCUAGAGAcaCCC-CUCU- -5'
15684 5' -53.1 NC_004065.1 + 84018 0.67 0.980126
Target:  5'- aGCAGGA--AGAUCUUcgucGUGGGGAc- -3'
miRNA:   3'- gUGUCCUguUCUAGAGa---CACCCCUcu -5'
15684 5' -53.1 NC_004065.1 + 224571 0.67 0.977878
Target:  5'- gGCGGGACucgGGAUC-CUGgcccUGGGGAu- -3'
miRNA:   3'- gUGUCCUGu--UCUAGaGAC----ACCCCUcu -5'
15684 5' -53.1 NC_004065.1 + 113857 0.71 0.894603
Target:  5'- cUAC-GGACGAGAUCgcgaCUggauaGUGGGGAGGu -3'
miRNA:   3'- -GUGuCCUGUUCUAGa---GA-----CACCCCUCU- -5'
15684 5' -53.1 NC_004065.1 + 201568 0.71 0.894603
Target:  5'- gGCAGGGCgGAGAUC-CUGUccgaGGaGGAGAc -3'
miRNA:   3'- gUGUCCUG-UUCUAGaGACA----CC-CCUCU- -5'
15684 5' -53.1 NC_004065.1 + 41859 0.71 0.887912
Target:  5'- gAgAGGGCGAGAUaugUUGUGGGGAu- -3'
miRNA:   3'- gUgUCCUGUUCUAga-GACACCCCUcu -5'
15684 5' -53.1 NC_004065.1 + 116588 0.72 0.82674
Target:  5'- uCGCAGGGCGAacguGAucgcgUCUUUGUGGaGGAGGa -3'
miRNA:   3'- -GUGUCCUGUU----CU-----AGAGACACC-CCUCU- -5'
15684 5' -53.1 NC_004065.1 + 86933 0.73 0.800712
Target:  5'- gGCAGGGCGAGGgaacaCUG-GGGGGGAc -3'
miRNA:   3'- gUGUCCUGUUCUaga--GACaCCCCUCU- -5'
15684 5' -53.1 NC_004065.1 + 193645 0.77 0.583656
Target:  5'- aACGGGACgGAGGUCUCUGUGGGc--- -3'
miRNA:   3'- gUGUCCUG-UUCUAGAGACACCCcucu -5'
15684 5' -53.1 NC_004065.1 + 29326 1.09 0.008037
Target:  5'- uCACAGGACAAGAUCUCUGUGGGGAGAa -3'
miRNA:   3'- -GUGUCCUGUUCUAGAGACACCCCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.