miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15685 3' -51.9 NC_004065.1 + 118659 0.66 0.997611
Target:  5'- gCGAGAUCgAUCCCgACgCCGaagauGAUGACGCc -3'
miRNA:   3'- aGUUUUGG-UAGGG-UG-GGU-----CUGCUGCG- -5'
15685 3' -51.9 NC_004065.1 + 23432 0.66 0.997611
Target:  5'- gUCG--GCCAUCCC-CCCGcuuGACcGAgGCc -3'
miRNA:   3'- -AGUuuUGGUAGGGuGGGU---CUG-CUgCG- -5'
15685 3' -51.9 NC_004065.1 + 32455 0.66 0.997611
Target:  5'- gCGcAGCCGcaugCCCACCaGGucguCGGCGCg -3'
miRNA:   3'- aGUuUUGGUa---GGGUGGgUCu---GCUGCG- -5'
15685 3' -51.9 NC_004065.1 + 107016 0.66 0.997611
Target:  5'- aCGugGCCG-CCaaUACCCGGACGucgauCGCg -3'
miRNA:   3'- aGUuuUGGUaGG--GUGGGUCUGCu----GCG- -5'
15685 3' -51.9 NC_004065.1 + 191792 0.66 0.997611
Target:  5'- --uGAGCCGcCCUugCUGGACGugGa -3'
miRNA:   3'- aguUUUGGUaGGGugGGUCUGCugCg -5'
15685 3' -51.9 NC_004065.1 + 214674 0.66 0.997611
Target:  5'- cUCGGAACCAUCauccgucaaggUCACCU---CGACGCc -3'
miRNA:   3'- -AGUUUUGGUAG-----------GGUGGGucuGCUGCG- -5'
15685 3' -51.9 NC_004065.1 + 109849 0.66 0.997611
Target:  5'- -gGGGGCCAUCgCGCaggugCCGGGCGGUGCc -3'
miRNA:   3'- agUUUUGGUAGgGUG-----GGUCUGCUGCG- -5'
15685 3' -51.9 NC_004065.1 + 229705 0.66 0.997611
Target:  5'- aCGGGGCUGgcggcagCgCCACCCcGugGugGCa -3'
miRNA:   3'- aGUUUUGGUa------G-GGUGGGuCugCugCG- -5'
15685 3' -51.9 NC_004065.1 + 140167 0.66 0.997611
Target:  5'- uUCGucGACCGaCCC-CUCGGGgGAUGCg -3'
miRNA:   3'- -AGUu-UUGGUaGGGuGGGUCUgCUGCG- -5'
15685 3' -51.9 NC_004065.1 + 209550 0.66 0.997611
Target:  5'- uUCAGGAUCGUCCUucgucaacaugACCCaccuguaccacAGACGGUGCc -3'
miRNA:   3'- -AGUUUUGGUAGGG-----------UGGG-----------UCUGCUGCG- -5'
15685 3' -51.9 NC_004065.1 + 190932 0.66 0.997489
Target:  5'- cUCGGAGCacccauccgaugaaCAUCgCGCaCCAGGCGAUGa -3'
miRNA:   3'- -AGUUUUG--------------GUAGgGUG-GGUCUGCUGCg -5'
15685 3' -51.9 NC_004065.1 + 132356 0.66 0.997184
Target:  5'- cUCGAAccGCCgcgcGUCCgGCaCCGG-CGugGCa -3'
miRNA:   3'- -AGUUU--UGG----UAGGgUG-GGUCuGCugCG- -5'
15685 3' -51.9 NC_004065.1 + 110148 0.66 0.997184
Target:  5'- --cGAGCCGggaCCC-CCCGacgcggccgcGGCGACGCc -3'
miRNA:   3'- aguUUUGGUa--GGGuGGGU----------CUGCUGCG- -5'
15685 3' -51.9 NC_004065.1 + 34564 0.66 0.997184
Target:  5'- uUCAcGACCuGUCCgACgCAGACcguGCGCu -3'
miRNA:   3'- -AGUuUUGG-UAGGgUGgGUCUGc--UGCG- -5'
15685 3' -51.9 NC_004065.1 + 199392 0.66 0.997184
Target:  5'- gUCGu--CCAUCUCGuCCCAGGUGcCGCu -3'
miRNA:   3'- -AGUuuuGGUAGGGU-GGGUCUGCuGCG- -5'
15685 3' -51.9 NC_004065.1 + 205803 0.66 0.997184
Target:  5'- ------aCGUCCUcCCCGGAUGAUGUc -3'
miRNA:   3'- aguuuugGUAGGGuGGGUCUGCUGCG- -5'
15685 3' -51.9 NC_004065.1 + 50418 0.66 0.997184
Target:  5'- gUCAGGACCAUCgC-UCgAGGCGcgguCGCa -3'
miRNA:   3'- -AGUUUUGGUAGgGuGGgUCUGCu---GCG- -5'
15685 3' -51.9 NC_004065.1 + 78488 0.66 0.997184
Target:  5'- gUCAAGcgcGCCcgacaCCGCCCGGcCGGCaGCg -3'
miRNA:   3'- -AGUUU---UGGuag--GGUGGGUCuGCUG-CG- -5'
15685 3' -51.9 NC_004065.1 + 142947 0.66 0.997184
Target:  5'- cCAGGGCCAgcugCCCACCU---CG-CGCg -3'
miRNA:   3'- aGUUUUGGUa---GGGUGGGucuGCuGCG- -5'
15685 3' -51.9 NC_004065.1 + 141357 0.66 0.997184
Target:  5'- aCAucuACCAUCCCGCCUucaaGcCGCu -3'
miRNA:   3'- aGUuu-UGGUAGGGUGGGucugCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.