miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15685 5' -53.5 NC_004065.1 + 32675 0.66 0.989422
Target:  5'- cGGGCGCGGUUCUcgcgcaGCGCCuucgGGa--- -3'
miRNA:   3'- -CCUGCGCCAAGAc-----UGUGGua--CCagau -5'
15685 5' -53.5 NC_004065.1 + 22375 0.66 0.989422
Target:  5'- aGAUGCGGUUC-GACAagauguCCAUGGg--- -3'
miRNA:   3'- cCUGCGCCAAGaCUGU------GGUACCagau -5'
15685 5' -53.5 NC_004065.1 + 25807 0.66 0.98803
Target:  5'- aGGCGCGGggCcGACGCCGacgccGUCUGu -3'
miRNA:   3'- cCUGCGCCaaGaCUGUGGUac---CAGAU- -5'
15685 5' -53.5 NC_004065.1 + 101631 0.66 0.98803
Target:  5'- cGGACcCGGgUCgaauccgGGCACCucugGGUCUGa -3'
miRNA:   3'- -CCUGcGCCaAGa------CUGUGGua--CCAGAU- -5'
15685 5' -53.5 NC_004065.1 + 198530 0.66 0.9865
Target:  5'- uGGaACGCGGUgUCgGACGCguugcacugcuCGUGGUCg- -3'
miRNA:   3'- -CC-UGCGCCA-AGaCUGUG-----------GUACCAGau -5'
15685 5' -53.5 NC_004065.1 + 200473 0.66 0.982994
Target:  5'- gGGAgCGCGGc-CUGAUGCCGacaggccucUGGUCUc -3'
miRNA:   3'- -CCU-GCGCCaaGACUGUGGU---------ACCAGAu -5'
15685 5' -53.5 NC_004065.1 + 188910 0.66 0.982414
Target:  5'- aGGuGCGCGGgUCuccggguuucaccuUGGCGCuCAUGGUCa- -3'
miRNA:   3'- -CC-UGCGCCaAG--------------ACUGUG-GUACCAGau -5'
15685 5' -53.5 NC_004065.1 + 60891 0.67 0.981003
Target:  5'- uGGCGCGGggCaacACgGCCGUGGUCUu -3'
miRNA:   3'- cCUGCGCCaaGac-UG-UGGUACCAGAu -5'
15685 5' -53.5 NC_004065.1 + 44466 0.67 0.981003
Target:  5'- cGACGCGGUg--GGCACaGUGGUg-- -3'
miRNA:   3'- cCUGCGCCAagaCUGUGgUACCAgau -5'
15685 5' -53.5 NC_004065.1 + 86046 0.68 0.95463
Target:  5'- cGACGcCGGUUCUcGCGCCucGGUCg- -3'
miRNA:   3'- cCUGC-GCCAAGAcUGUGGuaCCAGau -5'
15685 5' -53.5 NC_004065.1 + 42459 0.68 0.95463
Target:  5'- aGACGCGGUcgccaugCUGGCGCgaGUGGUUc- -3'
miRNA:   3'- cCUGCGCCAa------GACUGUGg-UACCAGau -5'
15685 5' -53.5 NC_004065.1 + 1243 0.69 0.942011
Target:  5'- cGACaGCGGcugccaUGGCACCGUGGUgUAa -3'
miRNA:   3'- cCUG-CGCCaag---ACUGUGGUACCAgAU- -5'
15685 5' -53.5 NC_004065.1 + 144727 0.69 0.937344
Target:  5'- cGGCGCacgucguGUUC-GGCGCCAUGGUCg- -3'
miRNA:   3'- cCUGCGc------CAAGaCUGUGGUACCAGau -5'
15685 5' -53.5 NC_004065.1 + 91965 0.69 0.937344
Target:  5'- aGACGCGGgagcUCgcgGACAUCGUGGcCg- -3'
miRNA:   3'- cCUGCGCCa---AGa--CUGUGGUACCaGau -5'
15685 5' -53.5 NC_004065.1 + 58174 0.69 0.932445
Target:  5'- gGGAgGCGGcUCUGAcCGCgGUGG-CUAc -3'
miRNA:   3'- -CCUgCGCCaAGACU-GUGgUACCaGAU- -5'
15685 5' -53.5 NC_004065.1 + 85557 0.7 0.921942
Target:  5'- cGGACGCGGUUuCUGACGaaGUG-UCa- -3'
miRNA:   3'- -CCUGCGCCAA-GACUGUggUACcAGau -5'
15685 5' -53.5 NC_004065.1 + 96868 0.74 0.76064
Target:  5'- cGGGCGCcGUUCUGGCcguggACCGUGGUg-- -3'
miRNA:   3'- -CCUGCGcCAAGACUG-----UGGUACCAgau -5'
15685 5' -53.5 NC_004065.1 + 36201 0.77 0.561319
Target:  5'- uGGugGCGGUUacagccGCACCGUGGUCg- -3'
miRNA:   3'- -CCugCGCCAAgac---UGUGGUACCAGau -5'
15685 5' -53.5 NC_004065.1 + 175883 0.79 0.493093
Target:  5'- cGGAUGCGGUUgUGGCACCuguuccauUGGUCc- -3'
miRNA:   3'- -CCUGCGCCAAgACUGUGGu-------ACCAGau -5'
15685 5' -53.5 NC_004065.1 + 29601 1.09 0.008009
Target:  5'- gGGACGCGGUUCUGACACCAUGGUCUAc -3'
miRNA:   3'- -CCUGCGCCAAGACUGUGGUACCAGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.