miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15686 3' -53.5 NC_004065.1 + 76003 0.66 0.990666
Target:  5'- cCCGGGUcaGCgCUGGGGCaGCCUG-CgCAAa -3'
miRNA:   3'- -GGCUCA--UG-GACCUUG-CGGACuG-GUUc -5'
15686 3' -53.5 NC_004065.1 + 130800 0.66 0.990425
Target:  5'- gCGAGacguccaucuuCCUGGAgcGCGCCUcGGCCGu- -3'
miRNA:   3'- gGCUCau---------GGACCU--UGCGGA-CUGGUuc -5'
15686 3' -53.5 NC_004065.1 + 124044 0.66 0.989414
Target:  5'- aCGAGgACgUGG-ACGCCUGGguCCGAc -3'
miRNA:   3'- gGCUCaUGgACCuUGCGGACU--GGUUc -5'
15686 3' -53.5 NC_004065.1 + 135255 0.66 0.988034
Target:  5'- uCCGAGgagaUGGAGgacCGgCUGGCCAGGu -3'
miRNA:   3'- -GGCUCauggACCUU---GCgGACUGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 69661 0.66 0.988034
Target:  5'- uCCGAGUGgCUGaAGCGCgUGAagGAGa -3'
miRNA:   3'- -GGCUCAUgGACcUUGCGgACUggUUC- -5'
15686 3' -53.5 NC_004065.1 + 101125 0.66 0.988034
Target:  5'- -gGAGaacUACCUGGGGCgcaGCCUGgacGCCGAa -3'
miRNA:   3'- ggCUC---AUGGACCUUG---CGGAC---UGGUUc -5'
15686 3' -53.5 NC_004065.1 + 117455 0.66 0.988034
Target:  5'- cCCGccaucaccUGCCUGGcgcAACGCCUGccCCAGGg -3'
miRNA:   3'- -GGCuc------AUGGACC---UUGCGGACu-GGUUC- -5'
15686 3' -53.5 NC_004065.1 + 138328 0.66 0.987142
Target:  5'- gCGAG-GCCUccucacccagggacaGGuuuCGCCUGAUCGAGa -3'
miRNA:   3'- gGCUCaUGGA---------------CCuu-GCGGACUGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 66125 0.67 0.985034
Target:  5'- aCCGAGgcgcuggcgcgcuggGCCgcGGAccgGCGCCagcUGGCCGAGc -3'
miRNA:   3'- -GGCUCa--------------UGGa-CCU---UGCGG---ACUGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 200102 0.67 0.983053
Target:  5'- aCGAGUGCCUGcGGCGgUggUGGCCGu- -3'
miRNA:   3'- gGCUCAUGGACcUUGCgG--ACUGGUuc -5'
15686 3' -53.5 NC_004065.1 + 31541 0.67 0.98248
Target:  5'- gCGcuGUACCUGGAuguaccuucuagagACGCCgu-CCGAGa -3'
miRNA:   3'- gGCu-CAUGGACCU--------------UGCGGacuGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 99788 0.67 0.981086
Target:  5'- gCGAG-ACg-GGAGCGCC-GACCAGc -3'
miRNA:   3'- gGCUCaUGgaCCUUGCGGaCUGGUUc -5'
15686 3' -53.5 NC_004065.1 + 145072 0.67 0.981086
Target:  5'- aCCGA-UGCCggGGAaguGCGCCgccACCGAGa -3'
miRNA:   3'- -GGCUcAUGGa-CCU---UGCGGac-UGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 115135 0.67 0.981086
Target:  5'- aCCGAGaugaugGCCUcGGAAcCGCC-GGCCGGc -3'
miRNA:   3'- -GGCUCa-----UGGA-CCUU-GCGGaCUGGUUc -5'
15686 3' -53.5 NC_004065.1 + 25208 0.67 0.978953
Target:  5'- --aAGUACCUGGuGGCGCCgauGCCGAc -3'
miRNA:   3'- ggcUCAUGGACC-UUGCGGac-UGGUUc -5'
15686 3' -53.5 NC_004065.1 + 186508 0.67 0.978953
Target:  5'- gCGAagGUACCUGuucGGGgGCCaGGCCAGGg -3'
miRNA:   3'- gGCU--CAUGGAC---CUUgCGGaCUGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 206470 0.67 0.978953
Target:  5'- aCGAauGUAUC-GGAACGCCUGAuacgcUCGAGu -3'
miRNA:   3'- gGCU--CAUGGaCCUUGCGGACU-----GGUUC- -5'
15686 3' -53.5 NC_004065.1 + 64449 0.67 0.976647
Target:  5'- gCUGAGgaaCUGucGCGCCgUGGCCGAGc -3'
miRNA:   3'- -GGCUCaugGACcuUGCGG-ACUGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 202458 0.67 0.976647
Target:  5'- gUCGGGUACCccccgGGGugGUggCUGGCCGu- -3'
miRNA:   3'- -GGCUCAUGGa----CCUugCG--GACUGGUuc -5'
15686 3' -53.5 NC_004065.1 + 83443 0.67 0.976647
Target:  5'- cUCGAGagcggGCCgccgGGAGCGCCUGGuCUg-- -3'
miRNA:   3'- -GGCUCa----UGGa---CCUUGCGGACU-GGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.