Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 64449 | 0.67 | 0.976647 |
Target: 5'- gCUGAGgaaCUGucGCGCCgUGGCCGAGc -3' miRNA: 3'- -GGCUCaugGACcuUGCGG-ACUGGUUC- -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 99788 | 0.67 | 0.981086 |
Target: 5'- gCGAG-ACg-GGAGCGCC-GACCAGc -3' miRNA: 3'- gGCUCaUGgaCCUUGCGGaCUGGUUc -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 202458 | 0.67 | 0.976647 |
Target: 5'- gUCGGGUACCccccgGGGugGUggCUGGCCGu- -3' miRNA: 3'- -GGCUCAUGGa----CCUugCG--GACUGGUuc -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 100096 | 0.68 | 0.96862 |
Target: 5'- aUCGGGgcgcagACgCUGaAACGCCUGGCCGGc -3' miRNA: 3'- -GGCUCa-----UG-GACcUUGCGGACUGGUUc -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 31909 | 0.68 | 0.971487 |
Target: 5'- gCCGGGUGgUcGGcgucAACGCCgugGGCCAGGu -3' miRNA: 3'- -GGCUCAUgGaCC----UUGCGGa--CUGGUUC- -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 198080 | 0.68 | 0.973901 |
Target: 5'- cCUGGG-ACCUGGAcgaccccaacgugGCGCCgcgggcgcuggUGACCAAc -3' miRNA: 3'- -GGCUCaUGGACCU-------------UGCGG-----------ACUGGUUc -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 103353 | 0.68 | 0.97416 |
Target: 5'- -gGAG-GCCgGGAugGCgaUGGCCAAGa -3' miRNA: 3'- ggCUCaUGGaCCUugCGg-ACUGGUUC- -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 227112 | 0.68 | 0.97416 |
Target: 5'- aCCuuGUACCcacaGGAugGCCUG-CCGAa -3' miRNA: 3'- -GGcuCAUGGa---CCUugCGGACuGGUUc -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 116391 | 0.68 | 0.965554 |
Target: 5'- cCCGAGccGCCgcaGGACGCC-GACCAGc -3' miRNA: 3'- -GGCUCa-UGGac-CUUGCGGaCUGGUUc -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 73520 | 0.68 | 0.962283 |
Target: 5'- aCGGGUggAUCUGGAACGUCUG--CGAGa -3' miRNA: 3'- gGCUCA--UGGACCUUGCGGACugGUUC- -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 66523 | 0.68 | 0.973901 |
Target: 5'- aUCGcuGUGCgUGGAGCGCCUGcgcuucaACCGc- -3' miRNA: 3'- -GGCu-CAUGgACCUUGCGGAC-------UGGUuc -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 26186 | 0.68 | 0.971487 |
Target: 5'- gCCGGcgcGUcccuuucgACCUcGAACGCCUGuCCGAGa -3' miRNA: 3'- -GGCU---CA--------UGGAcCUUGCGGACuGGUUC- -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 91444 | 0.68 | 0.965554 |
Target: 5'- aCUGAagGCCUGGAcgccgaagcgGCGCCUGGCa--- -3' miRNA: 3'- -GGCUcaUGGACCU----------UGCGGACUGguuc -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 131213 | 0.68 | 0.958802 |
Target: 5'- uCCGAGgcgaacauguUGCCgaugGGggUGCCgucGACCAAc -3' miRNA: 3'- -GGCUC----------AUGGa---CCuuGCGGa--CUGGUUc -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 26166 | 0.68 | 0.965554 |
Target: 5'- gCGGGaACCUGcGcAugGCCUGGCCc-- -3' miRNA: 3'- gGCUCaUGGAC-C-UugCGGACUGGuuc -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 152379 | 0.69 | 0.938111 |
Target: 5'- gCCGAGUugUUGaGGACGCaguaGACCGGc -3' miRNA: 3'- -GGCUCAugGAC-CUUGCGga--CUGGUUc -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 108788 | 0.69 | 0.947058 |
Target: 5'- uCCGucGU-CUUGGAuuuccuGCGCCUGcACCAGGa -3' miRNA: 3'- -GGCu-CAuGGACCU------UGCGGAC-UGGUUC- -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 27826 | 0.7 | 0.911733 |
Target: 5'- uCCGAuGUGCCUGcGggUGCUcGGCCGc- -3' miRNA: 3'- -GGCU-CAUGGAC-CuuGCGGaCUGGUuc -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 122271 | 0.7 | 0.933295 |
Target: 5'- gCCGAcaccgACCUGGGGCauccGCC-GGCCGAGg -3' miRNA: 3'- -GGCUca---UGGACCUUG----CGGaCUGGUUC- -5' |
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15686 | 3' | -53.5 | NC_004065.1 | + | 126341 | 0.71 | 0.872627 |
Target: 5'- cCCGAGUcgcaguuCCUGGAccaGCGgCUGACCu-- -3' miRNA: 3'- -GGCUCAu------GGACCU---UGCgGACUGGuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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