miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15686 3' -53.5 NC_004065.1 + 29746 1.12 0.005646
Target:  5'- aCCGAGUACCUGGAACGCCUGACCAAGa -3'
miRNA:   3'- -GGCUCAUGGACCUUGCGGACUGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 164115 0.75 0.68698
Target:  5'- aCCGAG-ACC-GGGGCGUCUG-CCGAGa -3'
miRNA:   3'- -GGCUCaUGGaCCUUGCGGACuGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 190022 0.73 0.791606
Target:  5'- cCCGGGguuUCUGGGGCGCCccGCCGGGu -3'
miRNA:   3'- -GGCUCau-GGACCUUGCGGacUGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 211733 0.73 0.800458
Target:  5'- aCCGGGcGCCUGGcuCGCaUGGCCGAa -3'
miRNA:   3'- -GGCUCaUGGACCuuGCGgACUGGUUc -5'
15686 3' -53.5 NC_004065.1 + 166021 0.72 0.850221
Target:  5'- gCGGGUGCCUGGA-CGCgUGguGCCGc- -3'
miRNA:   3'- gGCUCAUGGACCUuGCGgAC--UGGUuc -5'
15686 3' -53.5 NC_004065.1 + 126341 0.71 0.872627
Target:  5'- cCCGAGUcgcaguuCCUGGAccaGCGgCUGACCu-- -3'
miRNA:   3'- -GGCUCAu------GGACCU---UGCgGACUGGuuc -5'
15686 3' -53.5 NC_004065.1 + 33528 0.71 0.879688
Target:  5'- aCCGAGUugCUGGcagauGCGCUcGGgCAGGa -3'
miRNA:   3'- -GGCUCAugGACCu----UGCGGaCUgGUUC- -5'
15686 3' -53.5 NC_004065.1 + 127736 0.71 0.879688
Target:  5'- uCCGAGU----GGAcguGCGCCUGACCGAc -3'
miRNA:   3'- -GGCUCAuggaCCU---UGCGGACUGGUUc -5'
15686 3' -53.5 NC_004065.1 + 187020 0.71 0.879688
Target:  5'- aCCGAGUACgaGGAGaccuCGUUuggGACCAAGa -3'
miRNA:   3'- -GGCUCAUGgaCCUU----GCGGa--CUGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 27826 0.7 0.911733
Target:  5'- uCCGAuGUGCCUGcGggUGCUcGGCCGc- -3'
miRNA:   3'- -GGCU-CAUGGAC-CuuGCGGaCUGGUuc -5'
15686 3' -53.5 NC_004065.1 + 122271 0.7 0.933295
Target:  5'- gCCGAcaccgACCUGGGGCauccGCC-GGCCGAGg -3'
miRNA:   3'- -GGCUca---UGGACCUUG----CGGaCUGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 152379 0.69 0.938111
Target:  5'- gCCGAGUugUUGaGGACGCaguaGACCGGc -3'
miRNA:   3'- -GGCUCAugGAC-CUUGCGga--CUGGUUc -5'
15686 3' -53.5 NC_004065.1 + 108788 0.69 0.947058
Target:  5'- uCCGucGU-CUUGGAuuuccuGCGCCUGcACCAGGa -3'
miRNA:   3'- -GGCu-CAuGGACCU------UGCGGAC-UGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 131213 0.68 0.958802
Target:  5'- uCCGAGgcgaacauguUGCCgaugGGggUGCCgucGACCAAc -3'
miRNA:   3'- -GGCUC----------AUGGa---CCuuGCGGa--CUGGUUc -5'
15686 3' -53.5 NC_004065.1 + 73520 0.68 0.962283
Target:  5'- aCGGGUggAUCUGGAACGUCUG--CGAGa -3'
miRNA:   3'- gGCUCA--UGGACCUUGCGGACugGUUC- -5'
15686 3' -53.5 NC_004065.1 + 116391 0.68 0.965554
Target:  5'- cCCGAGccGCCgcaGGACGCC-GACCAGc -3'
miRNA:   3'- -GGCUCa-UGGac-CUUGCGGaCUGGUUc -5'
15686 3' -53.5 NC_004065.1 + 26166 0.68 0.965554
Target:  5'- gCGGGaACCUGcGcAugGCCUGGCCc-- -3'
miRNA:   3'- gGCUCaUGGAC-C-UugCGGACUGGuuc -5'
15686 3' -53.5 NC_004065.1 + 91444 0.68 0.965554
Target:  5'- aCUGAagGCCUGGAcgccgaagcgGCGCCUGGCa--- -3'
miRNA:   3'- -GGCUcaUGGACCU----------UGCGGACUGguuc -5'
15686 3' -53.5 NC_004065.1 + 100096 0.68 0.96862
Target:  5'- aUCGGGgcgcagACgCUGaAACGCCUGGCCGGc -3'
miRNA:   3'- -GGCUCa-----UG-GACcUUGCGGACUGGUUc -5'
15686 3' -53.5 NC_004065.1 + 26186 0.68 0.971487
Target:  5'- gCCGGcgcGUcccuuucgACCUcGAACGCCUGuCCGAGa -3'
miRNA:   3'- -GGCU---CA--------UGGAcCUUGCGGACuGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.