miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15686 3' -53.5 NC_004065.1 + 25208 0.67 0.978953
Target:  5'- --aAGUACCUGGuGGCGCCgauGCCGAc -3'
miRNA:   3'- ggcUCAUGGACC-UUGCGGac-UGGUUc -5'
15686 3' -53.5 NC_004065.1 + 26166 0.68 0.965554
Target:  5'- gCGGGaACCUGcGcAugGCCUGGCCc-- -3'
miRNA:   3'- gGCUCaUGGAC-C-UugCGGACUGGuuc -5'
15686 3' -53.5 NC_004065.1 + 26186 0.68 0.971487
Target:  5'- gCCGGcgcGUcccuuucgACCUcGAACGCCUGuCCGAGa -3'
miRNA:   3'- -GGCU---CA--------UGGAcCUUGCGGACuGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 27826 0.7 0.911733
Target:  5'- uCCGAuGUGCCUGcGggUGCUcGGCCGc- -3'
miRNA:   3'- -GGCU-CAUGGAC-CuuGCGGaCUGGUuc -5'
15686 3' -53.5 NC_004065.1 + 29746 1.12 0.005646
Target:  5'- aCCGAGUACCUGGAACGCCUGACCAAGa -3'
miRNA:   3'- -GGCUCAUGGACCUUGCGGACUGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 31541 0.67 0.98248
Target:  5'- gCGcuGUACCUGGAuguaccuucuagagACGCCgu-CCGAGa -3'
miRNA:   3'- gGCu-CAUGGACCU--------------UGCGGacuGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 31909 0.68 0.971487
Target:  5'- gCCGGGUGgUcGGcgucAACGCCgugGGCCAGGu -3'
miRNA:   3'- -GGCUCAUgGaCC----UUGCGGa--CUGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 33528 0.71 0.879688
Target:  5'- aCCGAGUugCUGGcagauGCGCUcGGgCAGGa -3'
miRNA:   3'- -GGCUCAugGACCu----UGCGGaCUgGUUC- -5'
15686 3' -53.5 NC_004065.1 + 56680 0.67 0.976647
Target:  5'- -aGAGUAC--GGAcCGCCUGACCu-- -3'
miRNA:   3'- ggCUCAUGgaCCUuGCGGACUGGuuc -5'
15686 3' -53.5 NC_004065.1 + 64449 0.67 0.976647
Target:  5'- gCUGAGgaaCUGucGCGCCgUGGCCGAGc -3'
miRNA:   3'- -GGCUCaugGACcuUGCGG-ACUGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 66125 0.67 0.985034
Target:  5'- aCCGAGgcgcuggcgcgcuggGCCgcGGAccgGCGCCagcUGGCCGAGc -3'
miRNA:   3'- -GGCUCa--------------UGGa-CCU---UGCGG---ACUGGUUC- -5'
15686 3' -53.5 NC_004065.1 + 66523 0.68 0.973901
Target:  5'- aUCGcuGUGCgUGGAGCGCCUGcgcuucaACCGc- -3'
miRNA:   3'- -GGCu-CAUGgACCUUGCGGAC-------UGGUuc -5'
15686 3' -53.5 NC_004065.1 + 69661 0.66 0.988034
Target:  5'- uCCGAGUGgCUGaAGCGCgUGAagGAGa -3'
miRNA:   3'- -GGCUCAUgGACcUUGCGgACUggUUC- -5'
15686 3' -53.5 NC_004065.1 + 73520 0.68 0.962283
Target:  5'- aCGGGUggAUCUGGAACGUCUG--CGAGa -3'
miRNA:   3'- gGCUCA--UGGACCUUGCGGACugGUUC- -5'
15686 3' -53.5 NC_004065.1 + 76003 0.66 0.990666
Target:  5'- cCCGGGUcaGCgCUGGGGCaGCCUG-CgCAAa -3'
miRNA:   3'- -GGCUCA--UG-GACCUUG-CGGACuG-GUUc -5'
15686 3' -53.5 NC_004065.1 + 83443 0.67 0.976647
Target:  5'- cUCGAGagcggGCCgccgGGAGCGCCUGGuCUg-- -3'
miRNA:   3'- -GGCUCa----UGGa---CCUUGCGGACU-GGuuc -5'
15686 3' -53.5 NC_004065.1 + 91444 0.68 0.965554
Target:  5'- aCUGAagGCCUGGAcgccgaagcgGCGCCUGGCa--- -3'
miRNA:   3'- -GGCUcaUGGACCU----------UGCGGACUGguuc -5'
15686 3' -53.5 NC_004065.1 + 99788 0.67 0.981086
Target:  5'- gCGAG-ACg-GGAGCGCC-GACCAGc -3'
miRNA:   3'- gGCUCaUGgaCCUUGCGGaCUGGUUc -5'
15686 3' -53.5 NC_004065.1 + 100096 0.68 0.96862
Target:  5'- aUCGGGgcgcagACgCUGaAACGCCUGGCCGGc -3'
miRNA:   3'- -GGCUCa-----UG-GACcUUGCGGACUGGUUc -5'
15686 3' -53.5 NC_004065.1 + 101125 0.66 0.988034
Target:  5'- -gGAGaacUACCUGGGGCgcaGCCUGgacGCCGAa -3'
miRNA:   3'- ggCUC---AUGGACCUUG---CGGAC---UGGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.