Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 15686 | 3' | -53.5 | NC_004065.1 | + | 33528 | 0.71 | 0.879688 |
|
Target: 5'- aCCGAGUugCUGGcagauGCGCUcGGgCAGGa -3' miRNA: 3'- -GGCUCAugGACCu----UGCGGaCUgGUUC- -5' |
|||||||
| 15686 | 3' | -53.5 | NC_004065.1 | + | 31909 | 0.68 | 0.971487 |
|
Target: 5'- gCCGGGUGgUcGGcgucAACGCCgugGGCCAGGu -3' miRNA: 3'- -GGCUCAUgGaCC----UUGCGGa--CUGGUUC- -5' |
|||||||
| 15686 | 3' | -53.5 | NC_004065.1 | + | 31541 | 0.67 | 0.98248 |
|
Target: 5'- gCGcuGUACCUGGAuguaccuucuagagACGCCgu-CCGAGa -3' miRNA: 3'- gGCu-CAUGGACCU--------------UGCGGacuGGUUC- -5' |
|||||||
| 15686 | 3' | -53.5 | NC_004065.1 | + | 29746 | 1.12 | 0.005646 |
|
Target: 5'- aCCGAGUACCUGGAACGCCUGACCAAGa -3' miRNA: 3'- -GGCUCAUGGACCUUGCGGACUGGUUC- -5' |
|||||||
| 15686 | 3' | -53.5 | NC_004065.1 | + | 27826 | 0.7 | 0.911733 |
|
Target: 5'- uCCGAuGUGCCUGcGggUGCUcGGCCGc- -3' miRNA: 3'- -GGCU-CAUGGAC-CuuGCGGaCUGGUuc -5' |
|||||||
| 15686 | 3' | -53.5 | NC_004065.1 | + | 26186 | 0.68 | 0.971487 |
|
Target: 5'- gCCGGcgcGUcccuuucgACCUcGAACGCCUGuCCGAGa -3' miRNA: 3'- -GGCU---CA--------UGGAcCUUGCGGACuGGUUC- -5' |
|||||||
| 15686 | 3' | -53.5 | NC_004065.1 | + | 26166 | 0.68 | 0.965554 |
|
Target: 5'- gCGGGaACCUGcGcAugGCCUGGCCc-- -3' miRNA: 3'- gGCUCaUGGAC-C-UugCGGACUGGuuc -5' |
|||||||
| 15686 | 3' | -53.5 | NC_004065.1 | + | 25208 | 0.67 | 0.978953 |
|
Target: 5'- --aAGUACCUGGuGGCGCCgauGCCGAc -3' miRNA: 3'- ggcUCAUGGACC-UUGCGGac-UGGUUc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home