Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 26186 | 0.68 | 0.971487 |
Target: 5'- gCCGGcgcGUcccuuucgACCUcGAACGCCUGuCCGAGa -3' miRNA: 3'- -GGCU---CA--------UGGAcCUUGCGGACuGGUUC- -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 31909 | 0.68 | 0.971487 |
Target: 5'- gCCGGGUGgUcGGcgucAACGCCgugGGCCAGGu -3' miRNA: 3'- -GGCUCAUgGaCC----UUGCGGa--CUGGUUC- -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 198080 | 0.68 | 0.973901 |
Target: 5'- cCUGGG-ACCUGGAcgaccccaacgugGCGCCgcgggcgcuggUGACCAAc -3' miRNA: 3'- -GGCUCaUGGACCU-------------UGCGG-----------ACUGGUUc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 103353 | 0.68 | 0.97416 |
Target: 5'- -gGAG-GCCgGGAugGCgaUGGCCAAGa -3' miRNA: 3'- ggCUCaUGGaCCUugCGg-ACUGGUUC- -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 202458 | 0.67 | 0.976647 |
Target: 5'- gUCGGGUACCccccgGGGugGUggCUGGCCGu- -3' miRNA: 3'- -GGCUCAUGGa----CCUugCG--GACUGGUuc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 137826 | 0.67 | 0.976647 |
Target: 5'- aCgGAGUACCUGacgcACGCCUucGACCu-- -3' miRNA: 3'- -GgCUCAUGGACcu--UGCGGA--CUGGuuc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 83443 | 0.67 | 0.976647 |
Target: 5'- cUCGAGagcggGCCgccgGGAGCGCCUGGuCUg-- -3' miRNA: 3'- -GGCUCa----UGGa---CCUUGCGGACU-GGuuc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 101234 | 0.67 | 0.976647 |
Target: 5'- aCGuGUACCUGGccuaccggacGGCGCUguGCCGGGa -3' miRNA: 3'- gGCuCAUGGACC----------UUGCGGacUGGUUC- -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 56680 | 0.67 | 0.976647 |
Target: 5'- -aGAGUAC--GGAcCGCCUGACCu-- -3' miRNA: 3'- ggCUCAUGgaCCUuGCGGACUGGuuc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 100096 | 0.68 | 0.96862 |
Target: 5'- aUCGGGgcgcagACgCUGaAACGCCUGGCCGGc -3' miRNA: 3'- -GGCUCa-----UG-GACcUUGCGGACUGGUUc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 26166 | 0.68 | 0.965554 |
Target: 5'- gCGGGaACCUGcGcAugGCCUGGCCc-- -3' miRNA: 3'- gGCUCaUGGAC-C-UugCGGACUGGuuc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 116391 | 0.68 | 0.965554 |
Target: 5'- cCCGAGccGCCgcaGGACGCC-GACCAGc -3' miRNA: 3'- -GGCUCa-UGGac-CUUGCGGaCUGGUUc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 76003 | 0.66 | 0.990666 |
Target: 5'- cCCGGGUcaGCgCUGGGGCaGCCUG-CgCAAa -3' miRNA: 3'- -GGCUCA--UG-GACCUUG-CGGACuG-GUUc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 190022 | 0.73 | 0.791606 |
Target: 5'- cCCGGGguuUCUGGGGCGCCccGCCGGGu -3' miRNA: 3'- -GGCUCau-GGACCUUGCGGacUGGUUC- -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 211733 | 0.73 | 0.800458 |
Target: 5'- aCCGGGcGCCUGGcuCGCaUGGCCGAa -3' miRNA: 3'- -GGCUCaUGGACCuuGCGgACUGGUUc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 166021 | 0.72 | 0.850221 |
Target: 5'- gCGGGUGCCUGGA-CGCgUGguGCCGc- -3' miRNA: 3'- gGCUCAUGGACCUuGCGgAC--UGGUuc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 126341 | 0.71 | 0.872627 |
Target: 5'- cCCGAGUcgcaguuCCUGGAccaGCGgCUGACCu-- -3' miRNA: 3'- -GGCUCAu------GGACCU---UGCgGACUGGuuc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 152379 | 0.69 | 0.938111 |
Target: 5'- gCCGAGUugUUGaGGACGCaguaGACCGGc -3' miRNA: 3'- -GGCUCAugGAC-CUUGCGga--CUGGUUc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 131213 | 0.68 | 0.958802 |
Target: 5'- uCCGAGgcgaacauguUGCCgaugGGggUGCCgucGACCAAc -3' miRNA: 3'- -GGCUC----------AUGGa---CCuuGCGGa--CUGGUUc -5' |
|||||||
15686 | 3' | -53.5 | NC_004065.1 | + | 73520 | 0.68 | 0.962283 |
Target: 5'- aCGGGUggAUCUGGAACGUCUG--CGAGa -3' miRNA: 3'- gGCUCA--UGGACCUUGCGGACugGUUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home