miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15686 5' -54.2 NC_004065.1 + 222027 0.66 0.984707
Target:  5'- cCUCUUGAaCGUCGGGUUgUUCGCUu- -3'
miRNA:   3'- -GAGAGCUaGCGGUUCAAgAGGCGGug -5'
15686 5' -54.2 NC_004065.1 + 81686 0.66 0.984707
Target:  5'- ----aGAUCcCCGuccAGUUCUCCGCCGg -3'
miRNA:   3'- gagagCUAGcGGU---UCAAGAGGCGGUg -5'
15686 5' -54.2 NC_004065.1 + 115001 0.66 0.984707
Target:  5'- gUCaUCGucGUCGUCcgaaucggGAGggCUCCGCCGCc -3'
miRNA:   3'- gAG-AGC--UAGCGG--------UUCaaGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 208139 0.66 0.984707
Target:  5'- ---aCGAUCGCCGAucuaacGUUCguaCCGuCCGCg -3'
miRNA:   3'- gagaGCUAGCGGUU------CAAGa--GGC-GGUG- -5'
15686 5' -54.2 NC_004065.1 + 162406 0.66 0.984707
Target:  5'- aUCUCGAaCGCCGuacGGUgcgaCggaCGCCGCg -3'
miRNA:   3'- gAGAGCUaGCGGU---UCAa---Gag-GCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 168894 0.66 0.982875
Target:  5'- ---aCGGUCGCCGcGccggCUCCGcCCGCg -3'
miRNA:   3'- gagaGCUAGCGGUuCaa--GAGGC-GGUG- -5'
15686 5' -54.2 NC_004065.1 + 68527 0.66 0.980882
Target:  5'- -cCUCGAacagCGCCAGGaUCUUcgaCGCCAg -3'
miRNA:   3'- gaGAGCUa---GCGGUUCaAGAG---GCGGUg -5'
15686 5' -54.2 NC_004065.1 + 69755 0.66 0.980882
Target:  5'- cCUCcagCGAcugCGUCGAGUUCUUCugguugGCCGCg -3'
miRNA:   3'- -GAGa--GCUa--GCGGUUCAAGAGG------CGGUG- -5'
15686 5' -54.2 NC_004065.1 + 164825 0.66 0.980882
Target:  5'- gCUCUgGAgCGCgAAGcggUCggcgCCGCCGCc -3'
miRNA:   3'- -GAGAgCUaGCGgUUCa--AGa---GGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 58704 0.66 0.980882
Target:  5'- -gCUCGGUUGUaacagcgagcuCGAGUUCaCCGCCAg -3'
miRNA:   3'- gaGAGCUAGCG-----------GUUCAAGaGGCGGUg -5'
15686 5' -54.2 NC_004065.1 + 127396 0.66 0.978721
Target:  5'- ---gCGAUCGCCGccgccGGUagCgccgCCGCCGCg -3'
miRNA:   3'- gagaGCUAGCGGU-----UCAa-Ga---GGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 126307 0.66 0.978721
Target:  5'- gCUCaCGAUcacgccCGCCAGGcgCUCCccGCCGCc -3'
miRNA:   3'- -GAGaGCUA------GCGGUUCaaGAGG--CGGUG- -5'
15686 5' -54.2 NC_004065.1 + 135272 0.66 0.974895
Target:  5'- ---cCGGcUgGCCAGGUucgcgcugaaacgcgUCUCCGCCGCc -3'
miRNA:   3'- gagaGCU-AgCGGUUCA---------------AGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 114099 0.66 0.973865
Target:  5'- aUCUCGuccguagacCGCCAAGguacccCUCCGCCu- -3'
miRNA:   3'- gAGAGCua-------GCGGUUCaa----GAGGCGGug -5'
15686 5' -54.2 NC_004065.1 + 88398 0.67 0.971155
Target:  5'- -cCUCcGUCGCCGAG----CCGCCACc -3'
miRNA:   3'- gaGAGcUAGCGGUUCaagaGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 122578 0.67 0.971155
Target:  5'- aUCUCGGUCGCCAG------CGCCAUg -3'
miRNA:   3'- gAGAGCUAGCGGUUcaagagGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 63675 0.67 0.971155
Target:  5'- -gCUCGAccUCGCCGAGacUCUCC-CgCACg -3'
miRNA:   3'- gaGAGCU--AGCGGUUCa-AGAGGcG-GUG- -5'
15686 5' -54.2 NC_004065.1 + 207428 0.67 0.96825
Target:  5'- -gCUCGAcUCGCCAGGcggUCUGCCGa -3'
miRNA:   3'- gaGAGCU-AGCGGUUCaagAGGCGGUg -5'
15686 5' -54.2 NC_004065.1 + 54278 0.67 0.967645
Target:  5'- ---cCGGUCGUuccuccuCAAGUcuaaucgUCUCCGCCACc -3'
miRNA:   3'- gagaGCUAGCG-------GUUCA-------AGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 86356 0.67 0.965143
Target:  5'- uUCgUCGua-GCCGAGgcUCUCgGCCACg -3'
miRNA:   3'- gAG-AGCuagCGGUUCa-AGAGgCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.