miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15686 5' -54.2 NC_004065.1 + 29711 1.09 0.006782
Target:  5'- gCUCUCGAUCGCCAAGUUCUCCGCCACc -3'
miRNA:   3'- -GAGAGCUAGCGGUUCAAGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 63824 0.83 0.278086
Target:  5'- cCUCUCGAuggUgGCCGAGaacgUCUCCGCCGCc -3'
miRNA:   3'- -GAGAGCU---AgCGGUUCa---AGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 199982 0.78 0.476397
Target:  5'- --aUCGAgCGCCGAGaaCUCCGCCACc -3'
miRNA:   3'- gagAGCUaGCGGUUCaaGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 56657 0.74 0.67374
Target:  5'- aCUCUCGAUCGCCAcucgcugaucggAGcgCUCCGaCCc- -3'
miRNA:   3'- -GAGAGCUAGCGGU------------UCaaGAGGC-GGug -5'
15686 5' -54.2 NC_004065.1 + 146186 0.73 0.723283
Target:  5'- cCUCcgccgUGggCGCCAAGUUCUCCGUCu- -3'
miRNA:   3'- -GAGa----GCuaGCGGUUCAAGAGGCGGug -5'
15686 5' -54.2 NC_004065.1 + 226693 0.73 0.723283
Target:  5'- gUCUCGAUCGgCGAGgacUCUCCuggagacgGCCGCc -3'
miRNA:   3'- gAGAGCUAGCgGUUCa--AGAGG--------CGGUG- -5'
15686 5' -54.2 NC_004065.1 + 189008 0.73 0.723283
Target:  5'- gUCgCGAUCGCCcuGGUgggCUUCGCCGCc -3'
miRNA:   3'- gAGaGCUAGCGGu-UCAa--GAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 77878 0.73 0.732998
Target:  5'- uUCUUGAUCGCCAGG---UCCGUCAg -3'
miRNA:   3'- gAGAGCUAGCGGUUCaagAGGCGGUg -5'
15686 5' -54.2 NC_004065.1 + 124559 0.73 0.770918
Target:  5'- -cCUCGGcCGCCuGGUUCgCCGUCACg -3'
miRNA:   3'- gaGAGCUaGCGGuUCAAGaGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 126044 0.72 0.806915
Target:  5'- aUCUCGcaCGCCGAGgcgcucaagacUCUCUGCCACc -3'
miRNA:   3'- gAGAGCuaGCGGUUCa----------AGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 66325 0.72 0.815549
Target:  5'- -aCUCGAUCGCCAGGUcCUCgaGCaGCu -3'
miRNA:   3'- gaGAGCUAGCGGUUCAaGAGg-CGgUG- -5'
15686 5' -54.2 NC_004065.1 + 25925 0.72 0.815549
Target:  5'- -cCUCGccgccUCGCCGgagcAGUUCUCCGUCAUc -3'
miRNA:   3'- gaGAGCu----AGCGGU----UCAAGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 198916 0.71 0.831502
Target:  5'- cCUCUCGAUcgcgcgcCGCCGGgcGUUCUgaUCGCCGCc -3'
miRNA:   3'- -GAGAGCUA-------GCGGUU--CAAGA--GGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 17555 0.71 0.840451
Target:  5'- gCUC-CGAg-GCCGuugUCUCCGCCGCa -3'
miRNA:   3'- -GAGaGCUagCGGUucaAGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 86073 0.71 0.859188
Target:  5'- uCUCUCGGucgacuccgagacucUCGCCGacgccGGUUCUCgCGCCuCg -3'
miRNA:   3'- -GAGAGCU---------------AGCGGU-----UCAAGAG-GCGGuG- -5'
15686 5' -54.2 NC_004065.1 + 62916 0.71 0.863697
Target:  5'- -aCagGGUCGCCGcugccgUCUCCGCCGCc -3'
miRNA:   3'- gaGagCUAGCGGUuca---AGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 197986 0.7 0.871047
Target:  5'- gUCggCGAUCGCCAAGgugaagCUCacggcgGCCGCg -3'
miRNA:   3'- gAGa-GCUAGCGGUUCaa----GAGg-----CGGUG- -5'
15686 5' -54.2 NC_004065.1 + 113656 0.7 0.871047
Target:  5'- aUCUCag-CGCCGGGUUCcCCGCCc- -3'
miRNA:   3'- gAGAGcuaGCGGUUCAAGaGGCGGug -5'
15686 5' -54.2 NC_004065.1 + 48903 0.7 0.885118
Target:  5'- -gCUCGAUC-CCA---UCUUCGCCACg -3'
miRNA:   3'- gaGAGCUAGcGGUucaAGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 222721 0.7 0.885118
Target:  5'- -gCUCGAUCGUCAGGagCUCCucGCC-Cg -3'
miRNA:   3'- gaGAGCUAGCGGUUCaaGAGG--CGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.