miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15686 5' -54.2 NC_004065.1 + 222721 0.7 0.885118
Target:  5'- -gCUCGAUCGUCAGGagCUCCucGCC-Cg -3'
miRNA:   3'- gaGAGCUAGCGGUUCaaGAGG--CGGuG- -5'
15686 5' -54.2 NC_004065.1 + 48903 0.7 0.885118
Target:  5'- -gCUCGAUC-CCA---UCUUCGCCACg -3'
miRNA:   3'- gaGAGCUAGcGGUucaAGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 121236 0.7 0.89183
Target:  5'- ---cCGccaCGCCAGGUUCgacgCCGCCACc -3'
miRNA:   3'- gagaGCua-GCGGUUCAAGa---GGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 80164 0.7 0.89183
Target:  5'- -aCUacgaGAUCGCCGAGga-UCCGCgACa -3'
miRNA:   3'- gaGAg---CUAGCGGUUCaagAGGCGgUG- -5'
15686 5' -54.2 NC_004065.1 + 69616 0.7 0.896396
Target:  5'- -cCUCGAcaucaugUCGCCGAGggcagguugccCUCCGCCAg -3'
miRNA:   3'- gaGAGCU-------AGCGGUUCaa---------GAGGCGGUg -5'
15686 5' -54.2 NC_004065.1 + 72937 0.7 0.898319
Target:  5'- --gUCGcUCGgCAGGUUCUCCagguGCCGCa -3'
miRNA:   3'- gagAGCuAGCgGUUCAAGAGG----CGGUG- -5'
15686 5' -54.2 NC_004065.1 + 34136 0.69 0.904584
Target:  5'- gUCUCacccUCGCCuGGgaCUCCGCCAUc -3'
miRNA:   3'- gAGAGcu--AGCGGuUCaaGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 76064 0.69 0.91062
Target:  5'- uCUgUCGucgUGCCAGGUgccUCgCCGCCGCu -3'
miRNA:   3'- -GAgAGCua-GCGGUUCA---AGaGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 68834 0.69 0.91062
Target:  5'- gCUCUgGAUCGCCg------CCGCCGCg -3'
miRNA:   3'- -GAGAgCUAGCGGuucaagaGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 142700 0.69 0.91062
Target:  5'- cCUCUCGAUCGCCuucaugacccuGAGgag-CCGgCGCg -3'
miRNA:   3'- -GAGAGCUAGCGG-----------UUCaagaGGCgGUG- -5'
15686 5' -54.2 NC_004065.1 + 127106 0.69 0.916427
Target:  5'- -gCUCcGUCGCCGuccAGUUCUCCcCCAUc -3'
miRNA:   3'- gaGAGcUAGCGGU---UCAAGAGGcGGUG- -5'
15686 5' -54.2 NC_004065.1 + 68616 0.69 0.922003
Target:  5'- -cCUCGGUCGUCGucuGUUCUCCacgggcagcuGCUGCa -3'
miRNA:   3'- gaGAGCUAGCGGUu--CAAGAGG----------CGGUG- -5'
15686 5' -54.2 NC_004065.1 + 97767 0.69 0.922003
Target:  5'- uUCgcgCGcAUCGUCGGGgugaUCCGCCGCa -3'
miRNA:   3'- gAGa--GC-UAGCGGUUCaag-AGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 126353 0.69 0.922003
Target:  5'- gUCUCcgGGUUGuCCAGGaugcUCUCCGUCACg -3'
miRNA:   3'- gAGAG--CUAGC-GGUUCa---AGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 222847 0.69 0.927346
Target:  5'- -gCUCGGUCGUCAuugacAGcgCgUCCGCCAUc -3'
miRNA:   3'- gaGAGCUAGCGGU-----UCaaG-AGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 154279 0.69 0.932457
Target:  5'- cCUCUCGAugacaacgUCGCCGccg---CCGCCGCg -3'
miRNA:   3'- -GAGAGCU--------AGCGGUucaagaGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 89951 0.69 0.932457
Target:  5'- aUCgUCGAUCGUCuGGUUCagCGCCGu -3'
miRNA:   3'- gAG-AGCUAGCGGuUCAAGagGCGGUg -5'
15686 5' -54.2 NC_004065.1 + 97840 0.68 0.937335
Target:  5'- -aCUUGAcguaCGUCAGGUUCucgUCCGCCAUc -3'
miRNA:   3'- gaGAGCUa---GCGGUUCAAG---AGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 111340 0.68 0.937335
Target:  5'- gUCaccgUGGUCGCCuGGaUCUCCGCCu- -3'
miRNA:   3'- gAGa---GCUAGCGGuUCaAGAGGCGGug -5'
15686 5' -54.2 NC_004065.1 + 227853 0.68 0.940151
Target:  5'- uUCUCGGUCGCCccgcuauagCUCCGuCCGa -3'
miRNA:   3'- gAGAGCUAGCGGuucaa----GAGGC-GGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.