miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15686 5' -54.2 NC_004065.1 + 94230 0.67 0.961828
Target:  5'- gUCcCGA-CGCCAuuuuGGUggcCUCCGCCAUu -3'
miRNA:   3'- gAGaGCUaGCGGU----UCAa--GAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 228624 0.67 0.961828
Target:  5'- ---cCGAgcUUGCUAcuUUCUCCGCCACu -3'
miRNA:   3'- gagaGCU--AGCGGUucAAGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 73763 0.67 0.957569
Target:  5'- gCUCUCGAUCGCUAAaaaagccaCCGUCAUa -3'
miRNA:   3'- -GAGAGCUAGCGGUUcaaga---GGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 51023 0.68 0.954556
Target:  5'- aCUCggugCGAuUCGCCGug-UCUCCuCCACg -3'
miRNA:   3'- -GAGa---GCU-AGCGGUucaAGAGGcGGUG- -5'
15686 5' -54.2 NC_004065.1 + 137571 0.68 0.95059
Target:  5'- --gUCGAaggcgugCGUCAGGUaCUCCGUCACg -3'
miRNA:   3'- gagAGCUa------GCGGUUCAaGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 122635 0.68 0.95059
Target:  5'- gCUCUCcauGAUCGCCAAccUCUCCuCCGa -3'
miRNA:   3'- -GAGAG---CUAGCGGUUcaAGAGGcGGUg -5'
15686 5' -54.2 NC_004065.1 + 54445 0.68 0.9464
Target:  5'- cCUCUCGcUCGCU--GUUCgcgcgcggUCUGCCGCg -3'
miRNA:   3'- -GAGAGCuAGCGGuuCAAG--------AGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 76305 0.68 0.9464
Target:  5'- uUCUCGucgaGCCgGAGga-UCCGCCGCg -3'
miRNA:   3'- gAGAGCuag-CGG-UUCaagAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 78926 0.68 0.9464
Target:  5'- gCUCUCGggCGCCGcGGcgCcggCCGCUGCg -3'
miRNA:   3'- -GAGAGCuaGCGGU-UCaaGa--GGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 74415 0.68 0.945968
Target:  5'- -gCUCGAaCGCCGccugcggGGUUCUCgGCC-Cg -3'
miRNA:   3'- gaGAGCUaGCGGU-------UCAAGAGgCGGuG- -5'
15686 5' -54.2 NC_004065.1 + 151404 0.68 0.941528
Target:  5'- gCUCgCGGUCGCCGAcgaucaucgcggcGUUg-CCGCCGCc -3'
miRNA:   3'- -GAGaGCUAGCGGUU-------------CAAgaGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 227853 0.68 0.940151
Target:  5'- uUCUCGGUCGCCccgcuauagCUCCGuCCGa -3'
miRNA:   3'- gAGAGCUAGCGGuucaa----GAGGC-GGUg -5'
15686 5' -54.2 NC_004065.1 + 97840 0.68 0.937335
Target:  5'- -aCUUGAcguaCGUCAGGUUCucgUCCGCCAUc -3'
miRNA:   3'- gaGAGCUa---GCGGUUCAAG---AGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 111340 0.68 0.937335
Target:  5'- gUCaccgUGGUCGCCuGGaUCUCCGCCu- -3'
miRNA:   3'- gAGa---GCUAGCGGuUCaAGAGGCGGug -5'
15686 5' -54.2 NC_004065.1 + 89951 0.69 0.932457
Target:  5'- aUCgUCGAUCGUCuGGUUCagCGCCGu -3'
miRNA:   3'- gAG-AGCUAGCGGuUCAAGagGCGGUg -5'
15686 5' -54.2 NC_004065.1 + 154279 0.69 0.932457
Target:  5'- cCUCUCGAugacaacgUCGCCGccg---CCGCCGCg -3'
miRNA:   3'- -GAGAGCU--------AGCGGUucaagaGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 222847 0.69 0.927346
Target:  5'- -gCUCGGUCGUCAuugacAGcgCgUCCGCCAUc -3'
miRNA:   3'- gaGAGCUAGCGGU-----UCaaG-AGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 68616 0.69 0.922003
Target:  5'- -cCUCGGUCGUCGucuGUUCUCCacgggcagcuGCUGCa -3'
miRNA:   3'- gaGAGCUAGCGGUu--CAAGAGG----------CGGUG- -5'
15686 5' -54.2 NC_004065.1 + 97767 0.69 0.922003
Target:  5'- uUCgcgCGcAUCGUCGGGgugaUCCGCCGCa -3'
miRNA:   3'- gAGa--GC-UAGCGGUUCaag-AGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 126353 0.69 0.922003
Target:  5'- gUCUCcgGGUUGuCCAGGaugcUCUCCGUCACg -3'
miRNA:   3'- gAGAG--CUAGC-GGUUCa---AGAGGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.