Results 41 - 60 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 127106 | 0.69 | 0.916427 |
Target: 5'- -gCUCcGUCGCCGuccAGUUCUCCcCCAUc -3' miRNA: 3'- gaGAGcUAGCGGU---UCAAGAGGcGGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 142700 | 0.69 | 0.91062 |
Target: 5'- cCUCUCGAUCGCCuucaugacccuGAGgag-CCGgCGCg -3' miRNA: 3'- -GAGAGCUAGCGG-----------UUCaagaGGCgGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 68834 | 0.69 | 0.91062 |
Target: 5'- gCUCUgGAUCGCCg------CCGCCGCg -3' miRNA: 3'- -GAGAgCUAGCGGuucaagaGGCGGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 76064 | 0.69 | 0.91062 |
Target: 5'- uCUgUCGucgUGCCAGGUgccUCgCCGCCGCu -3' miRNA: 3'- -GAgAGCua-GCGGUUCA---AGaGGCGGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 34136 | 0.69 | 0.904584 |
Target: 5'- gUCUCacccUCGCCuGGgaCUCCGCCAUc -3' miRNA: 3'- gAGAGcu--AGCGGuUCaaGAGGCGGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 72937 | 0.7 | 0.898319 |
Target: 5'- --gUCGcUCGgCAGGUUCUCCagguGCCGCa -3' miRNA: 3'- gagAGCuAGCgGUUCAAGAGG----CGGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 69616 | 0.7 | 0.896396 |
Target: 5'- -cCUCGAcaucaugUCGCCGAGggcagguugccCUCCGCCAg -3' miRNA: 3'- gaGAGCU-------AGCGGUUCaa---------GAGGCGGUg -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 80164 | 0.7 | 0.89183 |
Target: 5'- -aCUacgaGAUCGCCGAGga-UCCGCgACa -3' miRNA: 3'- gaGAg---CUAGCGGUUCaagAGGCGgUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 121236 | 0.7 | 0.89183 |
Target: 5'- ---cCGccaCGCCAGGUUCgacgCCGCCACc -3' miRNA: 3'- gagaGCua-GCGGUUCAAGa---GGCGGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 105922 | 0.7 | 0.885118 |
Target: 5'- aCUCaugUCGAUCGUCAccgcGGca-UCCGCCGCg -3' miRNA: 3'- -GAG---AGCUAGCGGU----UCaagAGGCGGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 200065 | 0.7 | 0.885118 |
Target: 5'- gUC-CGAcggagaguUCGCCAAGUUCaCCGaCCGCg -3' miRNA: 3'- gAGaGCU--------AGCGGUUCAAGaGGC-GGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 48903 | 0.7 | 0.885118 |
Target: 5'- -gCUCGAUC-CCA---UCUUCGCCACg -3' miRNA: 3'- gaGAGCUAGcGGUucaAGAGGCGGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 222721 | 0.7 | 0.885118 |
Target: 5'- -gCUCGAUCGUCAGGagCUCCucGCC-Cg -3' miRNA: 3'- gaGAGCUAGCGGUUCaaGAGG--CGGuG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 197986 | 0.7 | 0.871047 |
Target: 5'- gUCggCGAUCGCCAAGgugaagCUCacggcgGCCGCg -3' miRNA: 3'- gAGa-GCUAGCGGUUCaa----GAGg-----CGGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 113656 | 0.7 | 0.871047 |
Target: 5'- aUCUCag-CGCCGGGUUCcCCGCCc- -3' miRNA: 3'- gAGAGcuaGCGGUUCAAGaGGCGGug -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 62916 | 0.71 | 0.863697 |
Target: 5'- -aCagGGUCGCCGcugccgUCUCCGCCGCc -3' miRNA: 3'- gaGagCUAGCGGUuca---AGAGGCGGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 86073 | 0.71 | 0.859188 |
Target: 5'- uCUCUCGGucgacuccgagacucUCGCCGacgccGGUUCUCgCGCCuCg -3' miRNA: 3'- -GAGAGCU---------------AGCGGU-----UCAAGAG-GCGGuG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 17555 | 0.71 | 0.840451 |
Target: 5'- gCUC-CGAg-GCCGuugUCUCCGCCGCa -3' miRNA: 3'- -GAGaGCUagCGGUucaAGAGGCGGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 198916 | 0.71 | 0.831502 |
Target: 5'- cCUCUCGAUcgcgcgcCGCCGGgcGUUCUgaUCGCCGCc -3' miRNA: 3'- -GAGAGCUA-------GCGGUU--CAAGA--GGCGGUG- -5' |
|||||||
15686 | 5' | -54.2 | NC_004065.1 | + | 66325 | 0.72 | 0.815549 |
Target: 5'- -aCUCGAUCGCCAGGUcCUCgaGCaGCu -3' miRNA: 3'- gaGAGCUAGCGGUUCAaGAGg-CGgUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home