miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15686 5' -54.2 NC_004065.1 + 73763 0.67 0.957569
Target:  5'- gCUCUCGAUCGCUAAaaaagccaCCGUCAUa -3'
miRNA:   3'- -GAGAGCUAGCGGUUcaaga---GGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 74415 0.68 0.945968
Target:  5'- -gCUCGAaCGCCGccugcggGGUUCUCgGCC-Cg -3'
miRNA:   3'- gaGAGCUaGCGGU-------UCAAGAGgCGGuG- -5'
15686 5' -54.2 NC_004065.1 + 76064 0.69 0.91062
Target:  5'- uCUgUCGucgUGCCAGGUgccUCgCCGCCGCu -3'
miRNA:   3'- -GAgAGCua-GCGGUUCA---AGaGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 76305 0.68 0.9464
Target:  5'- uUCUCGucgaGCCgGAGga-UCCGCCGCg -3'
miRNA:   3'- gAGAGCuag-CGG-UUCaagAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 77878 0.73 0.732998
Target:  5'- uUCUUGAUCGCCAGG---UCCGUCAg -3'
miRNA:   3'- gAGAGCUAGCGGUUCaagAGGCGGUg -5'
15686 5' -54.2 NC_004065.1 + 78926 0.68 0.9464
Target:  5'- gCUCUCGggCGCCGcGGcgCcggCCGCUGCg -3'
miRNA:   3'- -GAGAGCuaGCGGU-UCaaGa--GGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 80164 0.7 0.89183
Target:  5'- -aCUacgaGAUCGCCGAGga-UCCGCgACa -3'
miRNA:   3'- gaGAg---CUAGCGGUUCaagAGGCGgUG- -5'
15686 5' -54.2 NC_004065.1 + 81686 0.66 0.984707
Target:  5'- ----aGAUCcCCGuccAGUUCUCCGCCGg -3'
miRNA:   3'- gagagCUAGcGGU---UCAAGAGGCGGUg -5'
15686 5' -54.2 NC_004065.1 + 86073 0.71 0.859188
Target:  5'- uCUCUCGGucgacuccgagacucUCGCCGacgccGGUUCUCgCGCCuCg -3'
miRNA:   3'- -GAGAGCU---------------AGCGGU-----UCAAGAG-GCGGuG- -5'
15686 5' -54.2 NC_004065.1 + 86356 0.67 0.965143
Target:  5'- uUCgUCGua-GCCGAGgcUCUCgGCCACg -3'
miRNA:   3'- gAG-AGCuagCGGUUCa-AGAGgCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 88398 0.67 0.971155
Target:  5'- -cCUCcGUCGCCGAG----CCGCCACc -3'
miRNA:   3'- gaGAGcUAGCGGUUCaagaGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 89951 0.69 0.932457
Target:  5'- aUCgUCGAUCGUCuGGUUCagCGCCGu -3'
miRNA:   3'- gAG-AGCUAGCGGuUCAAGagGCGGUg -5'
15686 5' -54.2 NC_004065.1 + 94230 0.67 0.961828
Target:  5'- gUCcCGA-CGCCAuuuuGGUggcCUCCGCCAUu -3'
miRNA:   3'- gAGaGCUaGCGGU----UCAa--GAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 97767 0.69 0.922003
Target:  5'- uUCgcgCGcAUCGUCGGGgugaUCCGCCGCa -3'
miRNA:   3'- gAGa--GC-UAGCGGUUCaag-AGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 97840 0.68 0.937335
Target:  5'- -aCUUGAcguaCGUCAGGUUCucgUCCGCCAUc -3'
miRNA:   3'- gaGAGCUa---GCGGUUCAAG---AGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 105922 0.7 0.885118
Target:  5'- aCUCaugUCGAUCGUCAccgcGGca-UCCGCCGCg -3'
miRNA:   3'- -GAG---AGCUAGCGGU----UCaagAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 111340 0.68 0.937335
Target:  5'- gUCaccgUGGUCGCCuGGaUCUCCGCCu- -3'
miRNA:   3'- gAGa---GCUAGCGGuUCaAGAGGCGGug -5'
15686 5' -54.2 NC_004065.1 + 113656 0.7 0.871047
Target:  5'- aUCUCag-CGCCGGGUUCcCCGCCc- -3'
miRNA:   3'- gAGAGcuaGCGGUUCAAGaGGCGGug -5'
15686 5' -54.2 NC_004065.1 + 114099 0.66 0.973865
Target:  5'- aUCUCGuccguagacCGCCAAGguacccCUCCGCCu- -3'
miRNA:   3'- gAGAGCua-------GCGGUUCaa----GAGGCGGug -5'
15686 5' -54.2 NC_004065.1 + 115001 0.66 0.984707
Target:  5'- gUCaUCGucGUCGUCcgaaucggGAGggCUCCGCCGCc -3'
miRNA:   3'- gAG-AGC--UAGCGG--------UUCaaGAGGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.