miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15686 5' -54.2 NC_004065.1 + 63675 0.67 0.971155
Target:  5'- -gCUCGAccUCGCCGAGacUCUCC-CgCACg -3'
miRNA:   3'- gaGAGCU--AGCGGUUCa-AGAGGcG-GUG- -5'
15686 5' -54.2 NC_004065.1 + 111340 0.68 0.937335
Target:  5'- gUCaccgUGGUCGCCuGGaUCUCCGCCu- -3'
miRNA:   3'- gAGa---GCUAGCGGuUCaAGAGGCGGug -5'
15686 5' -54.2 NC_004065.1 + 76305 0.68 0.9464
Target:  5'- uUCUCGucgaGCCgGAGga-UCCGCCGCg -3'
miRNA:   3'- gAGAGCuag-CGG-UUCaagAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 54445 0.68 0.9464
Target:  5'- cCUCUCGcUCGCU--GUUCgcgcgcggUCUGCCGCg -3'
miRNA:   3'- -GAGAGCuAGCGGuuCAAG--------AGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 137571 0.68 0.95059
Target:  5'- --gUCGAaggcgugCGUCAGGUaCUCCGUCACg -3'
miRNA:   3'- gagAGCUa------GCGGUUCAaGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 94230 0.67 0.961828
Target:  5'- gUCcCGA-CGCCAuuuuGGUggcCUCCGCCAUu -3'
miRNA:   3'- gAGaGCUaGCGGU----UCAa--GAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 86356 0.67 0.965143
Target:  5'- uUCgUCGua-GCCGAGgcUCUCgGCCACg -3'
miRNA:   3'- gAG-AGCuagCGGUUCa-AGAGgCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 54278 0.67 0.967645
Target:  5'- ---cCGGUCGUuccuccuCAAGUcuaaucgUCUCCGCCACc -3'
miRNA:   3'- gagaGCUAGCG-------GUUCA-------AGAGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 207428 0.67 0.96825
Target:  5'- -gCUCGAcUCGCCAGGcggUCUGCCGa -3'
miRNA:   3'- gaGAGCU-AGCGGUUCaagAGGCGGUg -5'
15686 5' -54.2 NC_004065.1 + 97840 0.68 0.937335
Target:  5'- -aCUUGAcguaCGUCAGGUUCucgUCCGCCAUc -3'
miRNA:   3'- gaGAGCUa---GCGGUUCAAG---AGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 89951 0.69 0.932457
Target:  5'- aUCgUCGAUCGUCuGGUUCagCGCCGu -3'
miRNA:   3'- gAG-AGCUAGCGGuUCAAGagGCGGUg -5'
15686 5' -54.2 NC_004065.1 + 222847 0.69 0.927346
Target:  5'- -gCUCGGUCGUCAuugacAGcgCgUCCGCCAUc -3'
miRNA:   3'- gaGAGCUAGCGGU-----UCaaG-AGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 146186 0.73 0.723283
Target:  5'- cCUCcgccgUGggCGCCAAGUUCUCCGUCu- -3'
miRNA:   3'- -GAGa----GCuaGCGGUUCAAGAGGCGGug -5'
15686 5' -54.2 NC_004065.1 + 124559 0.73 0.770918
Target:  5'- -cCUCGGcCGCCuGGUUCgCCGUCACg -3'
miRNA:   3'- gaGAGCUaGCGGuUCAAGaGGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 198916 0.71 0.831502
Target:  5'- cCUCUCGAUcgcgcgcCGCCGGgcGUUCUgaUCGCCGCc -3'
miRNA:   3'- -GAGAGCUA-------GCGGUU--CAAGA--GGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 113656 0.7 0.871047
Target:  5'- aUCUCag-CGCCGGGUUCcCCGCCc- -3'
miRNA:   3'- gAGAGcuaGCGGUUCAAGaGGCGGug -5'
15686 5' -54.2 NC_004065.1 + 222721 0.7 0.885118
Target:  5'- -gCUCGAUCGUCAGGagCUCCucGCC-Cg -3'
miRNA:   3'- gaGAGCUAGCGGUUCaaGAGG--CGGuG- -5'
15686 5' -54.2 NC_004065.1 + 121236 0.7 0.89183
Target:  5'- ---cCGccaCGCCAGGUUCgacgCCGCCACc -3'
miRNA:   3'- gagaGCua-GCGGUUCAAGa---GGCGGUG- -5'
15686 5' -54.2 NC_004065.1 + 127106 0.69 0.916427
Target:  5'- -gCUCcGUCGCCGuccAGUUCUCCcCCAUc -3'
miRNA:   3'- gaGAGcUAGCGGU---UCAAGAGGcGGUG- -5'
15686 5' -54.2 NC_004065.1 + 126353 0.69 0.922003
Target:  5'- gUCUCcgGGUUGuCCAGGaugcUCUCCGUCACg -3'
miRNA:   3'- gAGAG--CUAGC-GGUUCa---AGAGGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.