miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 3' -57.7 NC_004065.1 + 212766 0.66 0.930905
Target:  5'- -gCggCUCAGCGGAggUCGUgCG-GCCCGa -3'
miRNA:   3'- agGagGAGUCGCCU--AGUA-GCuCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 191350 0.66 0.930905
Target:  5'- gUUUCgUCGGCaGGUCggguGUCGAGCUCGa -3'
miRNA:   3'- aGGAGgAGUCGcCUAG----UAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 96631 0.66 0.930905
Target:  5'- gUCCUCgUCgccGGCGG-UCG-CGAGCUCu -3'
miRNA:   3'- -AGGAGgAG---UCGCCuAGUaGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 181264 0.66 0.930905
Target:  5'- cUCUUCCUCAGUGGgAUCAUCauaCUCa -3'
miRNA:   3'- -AGGAGGAGUCGCC-UAGUAGcucGGGc -5'
15687 3' -57.7 NC_004065.1 + 16809 0.66 0.930905
Target:  5'- -aUUCaUCAGCuaacaGAUCAUCGGGUCCGa -3'
miRNA:   3'- agGAGgAGUCGc----CUAGUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 126214 0.66 0.92587
Target:  5'- aCCcgCUggAGCGGGaCGUCGAGCUCa -3'
miRNA:   3'- aGGa-GGagUCGCCUaGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 163040 0.66 0.92587
Target:  5'- aCCUCCgUCAGUGGAccuaCGAgagcGCCCGc -3'
miRNA:   3'- aGGAGG-AGUCGCCUaguaGCU----CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 112566 0.66 0.92587
Target:  5'- uUCCUCCUUcuuguccaugGGCGGcgugcugCGUCGcaacguGCCCGu -3'
miRNA:   3'- -AGGAGGAG----------UCGCCua-----GUAGCu-----CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 213429 0.66 0.92587
Target:  5'- gCgUCCgCAGCGGuagaggUAUCGGGCuCCGu -3'
miRNA:   3'- aGgAGGaGUCGCCua----GUAGCUCG-GGC- -5'
15687 3' -57.7 NC_004065.1 + 202023 0.66 0.924837
Target:  5'- gUCCUCCUCGGCGcuguagacgaacAUCcUCGAcuccuuGCCCa -3'
miRNA:   3'- -AGGAGGAGUCGCc-----------UAGuAGCU------CGGGc -5'
15687 3' -57.7 NC_004065.1 + 58967 0.66 0.915142
Target:  5'- aCCUcggaCCUCAGCGccaaGGUCugcauGUCGGcGCCCGa -3'
miRNA:   3'- aGGA----GGAGUCGC----CUAG-----UAGCU-CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 163819 0.66 0.915142
Target:  5'- gUUCUCCacgCAGCGGGggg--GAGCCCa -3'
miRNA:   3'- -AGGAGGa--GUCGCCUaguagCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 186356 0.66 0.915142
Target:  5'- cCCUCgagguuCUCGGCGuGAUCcUCGGaCCCGg -3'
miRNA:   3'- aGGAG------GAGUCGC-CUAGuAGCUcGGGC- -5'
15687 3' -57.7 NC_004065.1 + 118645 0.66 0.90945
Target:  5'- cUCCUCCUCGGCgucGGA-CGaCGAcGCCuCGu -3'
miRNA:   3'- -AGGAGGAGUCG---CCUaGUaGCU-CGG-GC- -5'
15687 3' -57.7 NC_004065.1 + 108741 0.66 0.90945
Target:  5'- gUCgC-CCUCAcGCGGGUCuUCaAGCCCa -3'
miRNA:   3'- -AG-GaGGAGU-CGCCUAGuAGcUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 45239 0.66 0.90945
Target:  5'- cUCCUCCUCGGCcgggggagaacGGGUCgcuGUCGaAGgUCGg -3'
miRNA:   3'- -AGGAGGAGUCG-----------CCUAG---UAGC-UCgGGC- -5'
15687 3' -57.7 NC_004065.1 + 99527 0.66 0.903542
Target:  5'- aCCUCCgUCAGCuGGUCggCGcuCCCGu -3'
miRNA:   3'- aGGAGG-AGUCGcCUAGuaGCucGGGC- -5'
15687 3' -57.7 NC_004065.1 + 20823 0.67 0.891082
Target:  5'- gUCCUUCUCga-GGGUCGUCGAggaaaGCgCCGg -3'
miRNA:   3'- -AGGAGGAGucgCCUAGUAGCU-----CG-GGC- -5'
15687 3' -57.7 NC_004065.1 + 42817 0.67 0.891082
Target:  5'- cUCUUCCUCAuccucccccguGCGGAgggUCGgUCGAGaCCCc -3'
miRNA:   3'- -AGGAGGAGU-----------CGCCU---AGU-AGCUC-GGGc -5'
15687 3' -57.7 NC_004065.1 + 34102 0.67 0.891082
Target:  5'- -gCUCCUCAG-GGAg-AUCGAGUUCGu -3'
miRNA:   3'- agGAGGAGUCgCCUagUAGCUCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.