miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 3' -57.7 NC_004065.1 + 30186 1.09 0.003215
Target:  5'- cUCCUCCUCAGCGGAUCAUCGAGCCCGa -3'
miRNA:   3'- -AGGAGGAGUCGCCUAGUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 120060 0.83 0.16532
Target:  5'- uUCCUCC--AGCGGGUCuucuUCGAGCCCGa -3'
miRNA:   3'- -AGGAGGagUCGCCUAGu---AGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 124642 0.74 0.533688
Target:  5'- gCCUCCUCGcCGGccGUCAgCGAGUCCGg -3'
miRNA:   3'- aGGAGGAGUcGCC--UAGUaGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 96511 0.71 0.679603
Target:  5'- uUCCUCCUCGuCGGAggacgaCGaCGAGUCCGa -3'
miRNA:   3'- -AGGAGGAGUcGCCUa-----GUaGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 127733 0.71 0.679603
Target:  5'- gUCCUCgUCGGUGGcgCcgggGUCGGGuCCCGc -3'
miRNA:   3'- -AGGAGgAGUCGCCuaG----UAGCUC-GGGC- -5'
15687 3' -57.7 NC_004065.1 + 24336 0.71 0.679603
Target:  5'- aCgUCCUCGGCaucAUCAUCGAGCCg- -3'
miRNA:   3'- aGgAGGAGUCGcc-UAGUAGCUCGGgc -5'
15687 3' -57.7 NC_004065.1 + 33324 0.71 0.708585
Target:  5'- aUUCUCCUCgaagaGGCGGAUCccGUCGGGguUCCGa -3'
miRNA:   3'- -AGGAGGAG-----UCGCCUAG--UAGCUC--GGGC- -5'
15687 3' -57.7 NC_004065.1 + 149663 0.7 0.718138
Target:  5'- uUCCUCa-CGGCGG-UCAUCGAGUUCc -3'
miRNA:   3'- -AGGAGgaGUCGCCuAGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 118271 0.7 0.718138
Target:  5'- aUCCUCCgUCGGgaGGAggaCGagGAGCCCGa -3'
miRNA:   3'- -AGGAGG-AGUCg-CCUa--GUagCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 31692 0.7 0.727623
Target:  5'- gUCCUUCagcCAGUGGugccCGUCGAGCUCGg -3'
miRNA:   3'- -AGGAGGa--GUCGCCua--GUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 201310 0.7 0.737032
Target:  5'- cUCCUCCUCGGacaGGAUC-UCc-GCCCu -3'
miRNA:   3'- -AGGAGGAGUCg--CCUAGuAGcuCGGGc -5'
15687 3' -57.7 NC_004065.1 + 32599 0.7 0.746357
Target:  5'- aCgUCCccaAGCGGGagcUCGUCGAGCUCGu -3'
miRNA:   3'- aGgAGGag-UCGCCU---AGUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 145953 0.7 0.754671
Target:  5'- cUCCUCCUacccccgacccguUAGCGGcgGUCGUCGAaUCCGg -3'
miRNA:   3'- -AGGAGGA-------------GUCGCC--UAGUAGCUcGGGC- -5'
15687 3' -57.7 NC_004065.1 + 119831 0.7 0.75559
Target:  5'- -aCUCgC-CAGCaGGAucuUCGUCGAGCCCa -3'
miRNA:   3'- agGAG-GaGUCG-CCU---AGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 76732 0.7 0.75559
Target:  5'- -aCUCCUCGGCGGGga--CGGGCgCGg -3'
miRNA:   3'- agGAGGAGUCGCCUaguaGCUCGgGC- -5'
15687 3' -57.7 NC_004065.1 + 194785 0.7 0.764723
Target:  5'- aCCgggUCgcgCAGgGcGAUCGUCGAGCCCc -3'
miRNA:   3'- aGGa--GGa--GUCgC-CUAGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 163146 0.7 0.764723
Target:  5'- gUCUCCggaCAGCGGcUCGUCGuccggaucggcGGCCCa -3'
miRNA:   3'- aGGAGGa--GUCGCCuAGUAGC-----------UCGGGc -5'
15687 3' -57.7 NC_004065.1 + 73109 0.69 0.782656
Target:  5'- cUCUUCCUCgucggugccGGCGGAggAUCGGGaCCCc -3'
miRNA:   3'- -AGGAGGAG---------UCGCCUagUAGCUC-GGGc -5'
15687 3' -57.7 NC_004065.1 + 150253 0.69 0.800092
Target:  5'- cUCCUCCUCga-GGAUCGU-GGGCuCCGc -3'
miRNA:   3'- -AGGAGGAGucgCCUAGUAgCUCG-GGC- -5'
15687 3' -57.7 NC_004065.1 + 207531 0.69 0.800092
Target:  5'- gUCCUCCUCGccGCGcGcuccgcGUCGUCGcGCCUGa -3'
miRNA:   3'- -AGGAGGAGU--CGC-C------UAGUAGCuCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.