miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 3' -57.7 NC_004065.1 + 222719 0.67 0.891082
Target:  5'- aCCUCCccgUCuGCGuaucgugcGUCGUCGGGUCCGg -3'
miRNA:   3'- aGGAGG---AGuCGCc-------UAGUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 77241 0.67 0.884537
Target:  5'- cUCCUCCUcCAGC--AUCGUCucccGCCCGg -3'
miRNA:   3'- -AGGAGGA-GUCGccUAGUAGcu--CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 109940 0.67 0.884537
Target:  5'- gCgaUCUCGGCGGcgauGUCGUCGGagagcGCCCGg -3'
miRNA:   3'- aGgaGGAGUCGCC----UAGUAGCU-----CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 31409 0.67 0.877787
Target:  5'- -gCUCCggccgCGGCGGu--GUCGAuGCCCGa -3'
miRNA:   3'- agGAGGa----GUCGCCuagUAGCU-CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 78773 0.67 0.870835
Target:  5'- -gCUCCUCAGCGG-UguUCuGAGgCCGc -3'
miRNA:   3'- agGAGGAGUCGCCuAguAG-CUCgGGC- -5'
15687 3' -57.7 NC_004065.1 + 32287 0.67 0.863687
Target:  5'- gUCCgcgUCCUCGGUcuccUCGUCgGAGCCCGa -3'
miRNA:   3'- -AGG---AGGAGUCGccu-AGUAG-CUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 90959 0.68 0.856347
Target:  5'- aUCCUCUacCAgacGCGGAUCGuguUCGuGCCCa -3'
miRNA:   3'- -AGGAGGa-GU---CGCCUAGU---AGCuCGGGc -5'
15687 3' -57.7 NC_004065.1 + 18818 0.68 0.856347
Target:  5'- -gCUCCUCGGaggagucgcCGGAgaggucgucggCGUCGAGUCCGa -3'
miRNA:   3'- agGAGGAGUC---------GCCUa----------GUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 75677 0.68 0.84882
Target:  5'- cCCg-UUCGGCGGGUCAUCcguGAGCUCu -3'
miRNA:   3'- aGGagGAGUCGCCUAGUAG---CUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 118021 0.68 0.84882
Target:  5'- gUCCUCCUCccgacGGaGGAUCAggCG-GCCCu -3'
miRNA:   3'- -AGGAGGAG-----UCgCCUAGUa-GCuCGGGc -5'
15687 3' -57.7 NC_004065.1 + 161504 0.68 0.848058
Target:  5'- gCCUCCUCGGCcuccgGGAgaugCGUCcgccgccucaccuGAGCCUGc -3'
miRNA:   3'- aGGAGGAGUCG-----CCUa---GUAG-------------CUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 47608 0.68 0.836405
Target:  5'- cUCCUCCUCucgAuacaucgccgacacgGUGGAUCGUUGAuCCCGa -3'
miRNA:   3'- -AGGAGGAG---U---------------CGCCUAGUAGCUcGGGC- -5'
15687 3' -57.7 NC_004065.1 + 137267 0.69 0.808605
Target:  5'- --gUCCUCAGCgGGAUC-UCGucGCCCu -3'
miRNA:   3'- aggAGGAGUCG-CCUAGuAGCu-CGGGc -5'
15687 3' -57.7 NC_004065.1 + 65907 0.69 0.808605
Target:  5'- aUCUUCCUgCGGCGGcagCGgcagCGGGUCCGu -3'
miRNA:   3'- -AGGAGGA-GUCGCCua-GUa---GCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 86048 0.69 0.808605
Target:  5'- aCCaUCUUCuGCaGGUCGUUGAGCUCGc -3'
miRNA:   3'- aGG-AGGAGuCGcCUAGUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 207531 0.69 0.800092
Target:  5'- gUCCUCCUCGccGCGcGcuccgcGUCGUCGcGCCUGa -3'
miRNA:   3'- -AGGAGGAGU--CGC-C------UAGUAGCuCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 150253 0.69 0.800092
Target:  5'- cUCCUCCUCga-GGAUCGU-GGGCuCCGc -3'
miRNA:   3'- -AGGAGGAGucgCCUAGUAgCUCG-GGC- -5'
15687 3' -57.7 NC_004065.1 + 73109 0.69 0.782656
Target:  5'- cUCUUCCUCgucggugccGGCGGAggAUCGGGaCCCc -3'
miRNA:   3'- -AGGAGGAG---------UCGCCUagUAGCUC-GGGc -5'
15687 3' -57.7 NC_004065.1 + 194785 0.7 0.764723
Target:  5'- aCCgggUCgcgCAGgGcGAUCGUCGAGCCCc -3'
miRNA:   3'- aGGa--GGa--GUCgC-CUAGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 163146 0.7 0.764723
Target:  5'- gUCUCCggaCAGCGGcUCGUCGuccggaucggcGGCCCa -3'
miRNA:   3'- aGGAGGa--GUCGCCuAGUAGC-----------UCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.