miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 3' -57.7 NC_004065.1 + 16809 0.66 0.930905
Target:  5'- -aUUCaUCAGCuaacaGAUCAUCGGGUCCGa -3'
miRNA:   3'- agGAGgAGUCGc----CUAGUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 18818 0.68 0.856347
Target:  5'- -gCUCCUCGGaggagucgcCGGAgaggucgucggCGUCGAGUCCGa -3'
miRNA:   3'- agGAGGAGUC---------GCCUa----------GUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 20823 0.67 0.891082
Target:  5'- gUCCUUCUCga-GGGUCGUCGAggaaaGCgCCGg -3'
miRNA:   3'- -AGGAGGAGucgCCUAGUAGCU-----CG-GGC- -5'
15687 3' -57.7 NC_004065.1 + 24336 0.71 0.679603
Target:  5'- aCgUCCUCGGCaucAUCAUCGAGCCg- -3'
miRNA:   3'- aGgAGGAGUCGcc-UAGUAGCUCGGgc -5'
15687 3' -57.7 NC_004065.1 + 30186 1.09 0.003215
Target:  5'- cUCCUCCUCAGCGGAUCAUCGAGCCCGa -3'
miRNA:   3'- -AGGAGGAGUCGCCUAGUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 31409 0.67 0.877787
Target:  5'- -gCUCCggccgCGGCGGu--GUCGAuGCCCGa -3'
miRNA:   3'- agGAGGa----GUCGCCuagUAGCU-CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 31692 0.7 0.727623
Target:  5'- gUCCUUCagcCAGUGGugccCGUCGAGCUCGg -3'
miRNA:   3'- -AGGAGGa--GUCGCCua--GUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 32287 0.67 0.863687
Target:  5'- gUCCgcgUCCUCGGUcuccUCGUCgGAGCCCGa -3'
miRNA:   3'- -AGG---AGGAGUCGccu-AGUAG-CUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 32599 0.7 0.746357
Target:  5'- aCgUCCccaAGCGGGagcUCGUCGAGCUCGu -3'
miRNA:   3'- aGgAGGag-UCGCCU---AGUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 33324 0.71 0.708585
Target:  5'- aUUCUCCUCgaagaGGCGGAUCccGUCGGGguUCCGa -3'
miRNA:   3'- -AGGAGGAG-----UCGCCUAG--UAGCUC--GGGC- -5'
15687 3' -57.7 NC_004065.1 + 34102 0.67 0.891082
Target:  5'- -gCUCCUCAG-GGAg-AUCGAGUUCGu -3'
miRNA:   3'- agGAGGAGUCgCCUagUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 42817 0.67 0.891082
Target:  5'- cUCUUCCUCAuccucccccguGCGGAgggUCGgUCGAGaCCCc -3'
miRNA:   3'- -AGGAGGAGU-----------CGCCU---AGU-AGCUC-GGGc -5'
15687 3' -57.7 NC_004065.1 + 45239 0.66 0.90945
Target:  5'- cUCCUCCUCGGCcgggggagaacGGGUCgcuGUCGaAGgUCGg -3'
miRNA:   3'- -AGGAGGAGUCG-----------CCUAG---UAGC-UCgGGC- -5'
15687 3' -57.7 NC_004065.1 + 47608 0.68 0.836405
Target:  5'- cUCCUCCUCucgAuacaucgccgacacgGUGGAUCGUUGAuCCCGa -3'
miRNA:   3'- -AGGAGGAG---U---------------CGCCUAGUAGCUcGGGC- -5'
15687 3' -57.7 NC_004065.1 + 58967 0.66 0.915142
Target:  5'- aCCUcggaCCUCAGCGccaaGGUCugcauGUCGGcGCCCGa -3'
miRNA:   3'- aGGA----GGAGUCGC----CUAG-----UAGCU-CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 65907 0.69 0.808605
Target:  5'- aUCUUCCUgCGGCGGcagCGgcagCGGGUCCGu -3'
miRNA:   3'- -AGGAGGA-GUCGCCua-GUa---GCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 73109 0.69 0.782656
Target:  5'- cUCUUCCUCgucggugccGGCGGAggAUCGGGaCCCc -3'
miRNA:   3'- -AGGAGGAG---------UCGCCUagUAGCUC-GGGc -5'
15687 3' -57.7 NC_004065.1 + 75677 0.68 0.84882
Target:  5'- cCCg-UUCGGCGGGUCAUCcguGAGCUCu -3'
miRNA:   3'- aGGagGAGUCGCCUAGUAG---CUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 76732 0.7 0.75559
Target:  5'- -aCUCCUCGGCGGGga--CGGGCgCGg -3'
miRNA:   3'- agGAGGAGUCGCCUaguaGCUCGgGC- -5'
15687 3' -57.7 NC_004065.1 + 77241 0.67 0.884537
Target:  5'- cUCCUCCUcCAGC--AUCGUCucccGCCCGg -3'
miRNA:   3'- -AGGAGGA-GUCGccUAGUAGcu--CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.