miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 3' -57.7 NC_004065.1 + 78773 0.67 0.870835
Target:  5'- -gCUCCUCAGCGG-UguUCuGAGgCCGc -3'
miRNA:   3'- agGAGGAGUCGCCuAguAG-CUCgGGC- -5'
15687 3' -57.7 NC_004065.1 + 86048 0.69 0.808605
Target:  5'- aCCaUCUUCuGCaGGUCGUUGAGCUCGc -3'
miRNA:   3'- aGG-AGGAGuCGcCUAGUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 90959 0.68 0.856347
Target:  5'- aUCCUCUacCAgacGCGGAUCGuguUCGuGCCCa -3'
miRNA:   3'- -AGGAGGa-GU---CGCCUAGU---AGCuCGGGc -5'
15687 3' -57.7 NC_004065.1 + 96511 0.71 0.679603
Target:  5'- uUCCUCCUCGuCGGAggacgaCGaCGAGUCCGa -3'
miRNA:   3'- -AGGAGGAGUcGCCUa-----GUaGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 96631 0.66 0.930905
Target:  5'- gUCCUCgUCgccGGCGG-UCG-CGAGCUCu -3'
miRNA:   3'- -AGGAGgAG---UCGCCuAGUaGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 99527 0.66 0.903542
Target:  5'- aCCUCCgUCAGCuGGUCggCGcuCCCGu -3'
miRNA:   3'- aGGAGG-AGUCGcCUAGuaGCucGGGC- -5'
15687 3' -57.7 NC_004065.1 + 108741 0.66 0.90945
Target:  5'- gUCgC-CCUCAcGCGGGUCuUCaAGCCCa -3'
miRNA:   3'- -AG-GaGGAGU-CGCCUAGuAGcUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 109940 0.67 0.884537
Target:  5'- gCgaUCUCGGCGGcgauGUCGUCGGagagcGCCCGg -3'
miRNA:   3'- aGgaGGAGUCGCC----UAGUAGCU-----CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 112566 0.66 0.92587
Target:  5'- uUCCUCCUUcuuguccaugGGCGGcgugcugCGUCGcaacguGCCCGu -3'
miRNA:   3'- -AGGAGGAG----------UCGCCua-----GUAGCu-----CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 118021 0.68 0.84882
Target:  5'- gUCCUCCUCccgacGGaGGAUCAggCG-GCCCu -3'
miRNA:   3'- -AGGAGGAG-----UCgCCUAGUa-GCuCGGGc -5'
15687 3' -57.7 NC_004065.1 + 118271 0.7 0.718138
Target:  5'- aUCCUCCgUCGGgaGGAggaCGagGAGCCCGa -3'
miRNA:   3'- -AGGAGG-AGUCg-CCUa--GUagCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 118645 0.66 0.90945
Target:  5'- cUCCUCCUCGGCgucGGA-CGaCGAcGCCuCGu -3'
miRNA:   3'- -AGGAGGAGUCG---CCUaGUaGCU-CGG-GC- -5'
15687 3' -57.7 NC_004065.1 + 119831 0.7 0.75559
Target:  5'- -aCUCgC-CAGCaGGAucuUCGUCGAGCCCa -3'
miRNA:   3'- agGAG-GaGUCG-CCU---AGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 120060 0.83 0.16532
Target:  5'- uUCCUCC--AGCGGGUCuucuUCGAGCCCGa -3'
miRNA:   3'- -AGGAGGagUCGCCUAGu---AGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 124642 0.74 0.533688
Target:  5'- gCCUCCUCGcCGGccGUCAgCGAGUCCGg -3'
miRNA:   3'- aGGAGGAGUcGCC--UAGUaGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 126214 0.66 0.92587
Target:  5'- aCCcgCUggAGCGGGaCGUCGAGCUCa -3'
miRNA:   3'- aGGa-GGagUCGCCUaGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 127733 0.71 0.679603
Target:  5'- gUCCUCgUCGGUGGcgCcgggGUCGGGuCCCGc -3'
miRNA:   3'- -AGGAGgAGUCGCCuaG----UAGCUC-GGGC- -5'
15687 3' -57.7 NC_004065.1 + 137267 0.69 0.808605
Target:  5'- --gUCCUCAGCgGGAUC-UCGucGCCCu -3'
miRNA:   3'- aggAGGAGUCG-CCUAGuAGCu-CGGGc -5'
15687 3' -57.7 NC_004065.1 + 145953 0.7 0.754671
Target:  5'- cUCCUCCUacccccgacccguUAGCGGcgGUCGUCGAaUCCGg -3'
miRNA:   3'- -AGGAGGA-------------GUCGCC--UAGUAGCUcGGGC- -5'
15687 3' -57.7 NC_004065.1 + 149663 0.7 0.718138
Target:  5'- uUCCUCa-CGGCGG-UCAUCGAGUUCc -3'
miRNA:   3'- -AGGAGgaGUCGCCuAGUAGCUCGGGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.