miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 3' -57.7 NC_004065.1 + 150253 0.69 0.800092
Target:  5'- cUCCUCCUCga-GGAUCGU-GGGCuCCGc -3'
miRNA:   3'- -AGGAGGAGucgCCUAGUAgCUCG-GGC- -5'
15687 3' -57.7 NC_004065.1 + 161504 0.68 0.848058
Target:  5'- gCCUCCUCGGCcuccgGGAgaugCGUCcgccgccucaccuGAGCCUGc -3'
miRNA:   3'- aGGAGGAGUCG-----CCUa---GUAG-------------CUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 163040 0.66 0.92587
Target:  5'- aCCUCCgUCAGUGGAccuaCGAgagcGCCCGc -3'
miRNA:   3'- aGGAGG-AGUCGCCUaguaGCU----CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 163146 0.7 0.764723
Target:  5'- gUCUCCggaCAGCGGcUCGUCGuccggaucggcGGCCCa -3'
miRNA:   3'- aGGAGGa--GUCGCCuAGUAGC-----------UCGGGc -5'
15687 3' -57.7 NC_004065.1 + 163819 0.66 0.915142
Target:  5'- gUUCUCCacgCAGCGGGggg--GAGCCCa -3'
miRNA:   3'- -AGGAGGa--GUCGCCUaguagCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 181264 0.66 0.930905
Target:  5'- cUCUUCCUCAGUGGgAUCAUCauaCUCa -3'
miRNA:   3'- -AGGAGGAGUCGCC-UAGUAGcucGGGc -5'
15687 3' -57.7 NC_004065.1 + 186356 0.66 0.915142
Target:  5'- cCCUCgagguuCUCGGCGuGAUCcUCGGaCCCGg -3'
miRNA:   3'- aGGAG------GAGUCGC-CUAGuAGCUcGGGC- -5'
15687 3' -57.7 NC_004065.1 + 191350 0.66 0.930905
Target:  5'- gUUUCgUCGGCaGGUCggguGUCGAGCUCGa -3'
miRNA:   3'- aGGAGgAGUCGcCUAG----UAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 194785 0.7 0.764723
Target:  5'- aCCgggUCgcgCAGgGcGAUCGUCGAGCCCc -3'
miRNA:   3'- aGGa--GGa--GUCgC-CUAGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 201310 0.7 0.737032
Target:  5'- cUCCUCCUCGGacaGGAUC-UCc-GCCCu -3'
miRNA:   3'- -AGGAGGAGUCg--CCUAGuAGcuCGGGc -5'
15687 3' -57.7 NC_004065.1 + 202023 0.66 0.924837
Target:  5'- gUCCUCCUCGGCGcuguagacgaacAUCcUCGAcuccuuGCCCa -3'
miRNA:   3'- -AGGAGGAGUCGCc-----------UAGuAGCU------CGGGc -5'
15687 3' -57.7 NC_004065.1 + 207531 0.69 0.800092
Target:  5'- gUCCUCCUCGccGCGcGcuccgcGUCGUCGcGCCUGa -3'
miRNA:   3'- -AGGAGGAGU--CGC-C------UAGUAGCuCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 212766 0.66 0.930905
Target:  5'- -gCggCUCAGCGGAggUCGUgCG-GCCCGa -3'
miRNA:   3'- agGagGAGUCGCCU--AGUA-GCuCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 213429 0.66 0.92587
Target:  5'- gCgUCCgCAGCGGuagaggUAUCGGGCuCCGu -3'
miRNA:   3'- aGgAGGaGUCGCCua----GUAGCUCG-GGC- -5'
15687 3' -57.7 NC_004065.1 + 222719 0.67 0.891082
Target:  5'- aCCUCCccgUCuGCGuaucgugcGUCGUCGGGUCCGg -3'
miRNA:   3'- aGGAGG---AGuCGCc-------UAGUAGCUCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.