Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15687 | 3' | -57.7 | NC_004065.1 | + | 124642 | 0.74 | 0.533688 |
Target: 5'- gCCUCCUCGcCGGccGUCAgCGAGUCCGg -3' miRNA: 3'- aGGAGGAGUcGCC--UAGUaGCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 120060 | 0.83 | 0.16532 |
Target: 5'- uUCCUCC--AGCGGGUCuucuUCGAGCCCGa -3' miRNA: 3'- -AGGAGGagUCGCCUAGu---AGCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 119831 | 0.7 | 0.75559 |
Target: 5'- -aCUCgC-CAGCaGGAucuUCGUCGAGCCCa -3' miRNA: 3'- agGAG-GaGUCG-CCU---AGUAGCUCGGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 118645 | 0.66 | 0.90945 |
Target: 5'- cUCCUCCUCGGCgucGGA-CGaCGAcGCCuCGu -3' miRNA: 3'- -AGGAGGAGUCG---CCUaGUaGCU-CGG-GC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 118271 | 0.7 | 0.718138 |
Target: 5'- aUCCUCCgUCGGgaGGAggaCGagGAGCCCGa -3' miRNA: 3'- -AGGAGG-AGUCg-CCUa--GUagCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 118021 | 0.68 | 0.84882 |
Target: 5'- gUCCUCCUCccgacGGaGGAUCAggCG-GCCCu -3' miRNA: 3'- -AGGAGGAG-----UCgCCUAGUa-GCuCGGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 112566 | 0.66 | 0.92587 |
Target: 5'- uUCCUCCUUcuuguccaugGGCGGcgugcugCGUCGcaacguGCCCGu -3' miRNA: 3'- -AGGAGGAG----------UCGCCua-----GUAGCu-----CGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 109940 | 0.67 | 0.884537 |
Target: 5'- gCgaUCUCGGCGGcgauGUCGUCGGagagcGCCCGg -3' miRNA: 3'- aGgaGGAGUCGCC----UAGUAGCU-----CGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 108741 | 0.66 | 0.90945 |
Target: 5'- gUCgC-CCUCAcGCGGGUCuUCaAGCCCa -3' miRNA: 3'- -AG-GaGGAGU-CGCCUAGuAGcUCGGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 99527 | 0.66 | 0.903542 |
Target: 5'- aCCUCCgUCAGCuGGUCggCGcuCCCGu -3' miRNA: 3'- aGGAGG-AGUCGcCUAGuaGCucGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 96631 | 0.66 | 0.930905 |
Target: 5'- gUCCUCgUCgccGGCGG-UCG-CGAGCUCu -3' miRNA: 3'- -AGGAGgAG---UCGCCuAGUaGCUCGGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 96511 | 0.71 | 0.679603 |
Target: 5'- uUCCUCCUCGuCGGAggacgaCGaCGAGUCCGa -3' miRNA: 3'- -AGGAGGAGUcGCCUa-----GUaGCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 90959 | 0.68 | 0.856347 |
Target: 5'- aUCCUCUacCAgacGCGGAUCGuguUCGuGCCCa -3' miRNA: 3'- -AGGAGGa-GU---CGCCUAGU---AGCuCGGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 86048 | 0.69 | 0.808605 |
Target: 5'- aCCaUCUUCuGCaGGUCGUUGAGCUCGc -3' miRNA: 3'- aGG-AGGAGuCGcCUAGUAGCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 78773 | 0.67 | 0.870835 |
Target: 5'- -gCUCCUCAGCGG-UguUCuGAGgCCGc -3' miRNA: 3'- agGAGGAGUCGCCuAguAG-CUCgGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 77241 | 0.67 | 0.884537 |
Target: 5'- cUCCUCCUcCAGC--AUCGUCucccGCCCGg -3' miRNA: 3'- -AGGAGGA-GUCGccUAGUAGcu--CGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 76732 | 0.7 | 0.75559 |
Target: 5'- -aCUCCUCGGCGGGga--CGGGCgCGg -3' miRNA: 3'- agGAGGAGUCGCCUaguaGCUCGgGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 75677 | 0.68 | 0.84882 |
Target: 5'- cCCg-UUCGGCGGGUCAUCcguGAGCUCu -3' miRNA: 3'- aGGagGAGUCGCCUAGUAG---CUCGGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 73109 | 0.69 | 0.782656 |
Target: 5'- cUCUUCCUCgucggugccGGCGGAggAUCGGGaCCCc -3' miRNA: 3'- -AGGAGGAG---------UCGCCUagUAGCUC-GGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 65907 | 0.69 | 0.808605 |
Target: 5'- aUCUUCCUgCGGCGGcagCGgcagCGGGUCCGu -3' miRNA: 3'- -AGGAGGA-GUCGCCua-GUa---GCUCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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