miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 3' -57.7 NC_004065.1 + 118645 0.66 0.90945
Target:  5'- cUCCUCCUCGGCgucGGA-CGaCGAcGCCuCGu -3'
miRNA:   3'- -AGGAGGAGUCG---CCUaGUaGCU-CGG-GC- -5'
15687 3' -57.7 NC_004065.1 + 47608 0.68 0.836405
Target:  5'- cUCCUCCUCucgAuacaucgccgacacgGUGGAUCGUUGAuCCCGa -3'
miRNA:   3'- -AGGAGGAG---U---------------CGCCUAGUAGCUcGGGC- -5'
15687 3' -57.7 NC_004065.1 + 161504 0.68 0.848058
Target:  5'- gCCUCCUCGGCcuccgGGAgaugCGUCcgccgccucaccuGAGCCUGc -3'
miRNA:   3'- aGGAGGAGUCG-----CCUa---GUAG-------------CUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 118021 0.68 0.84882
Target:  5'- gUCCUCCUCccgacGGaGGAUCAggCG-GCCCu -3'
miRNA:   3'- -AGGAGGAG-----UCgCCUAGUa-GCuCGGGc -5'
15687 3' -57.7 NC_004065.1 + 32287 0.67 0.863687
Target:  5'- gUCCgcgUCCUCGGUcuccUCGUCgGAGCCCGa -3'
miRNA:   3'- -AGG---AGGAGUCGccu-AGUAG-CUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 42817 0.67 0.891082
Target:  5'- cUCUUCCUCAuccucccccguGCGGAgggUCGgUCGAGaCCCc -3'
miRNA:   3'- -AGGAGGAGU-----------CGCCU---AGU-AGCUC-GGGc -5'
15687 3' -57.7 NC_004065.1 + 20823 0.67 0.891082
Target:  5'- gUCCUUCUCga-GGGUCGUCGAggaaaGCgCCGg -3'
miRNA:   3'- -AGGAGGAGucgCCUAGUAGCU-----CG-GGC- -5'
15687 3' -57.7 NC_004065.1 + 99527 0.66 0.903542
Target:  5'- aCCUCCgUCAGCuGGUCggCGcuCCCGu -3'
miRNA:   3'- aGGAGG-AGUCGcCUAGuaGCucGGGC- -5'
15687 3' -57.7 NC_004065.1 + 108741 0.66 0.90945
Target:  5'- gUCgC-CCUCAcGCGGGUCuUCaAGCCCa -3'
miRNA:   3'- -AG-GaGGAGU-CGCCUAGuAGcUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 86048 0.69 0.808605
Target:  5'- aCCaUCUUCuGCaGGUCGUUGAGCUCGc -3'
miRNA:   3'- aGG-AGGAGuCGcCUAGUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 207531 0.69 0.800092
Target:  5'- gUCCUCCUCGccGCGcGcuccgcGUCGUCGcGCCUGa -3'
miRNA:   3'- -AGGAGGAGU--CGC-C------UAGUAGCuCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 150253 0.69 0.800092
Target:  5'- cUCCUCCUCga-GGAUCGU-GGGCuCCGc -3'
miRNA:   3'- -AGGAGGAGucgCCUAGUAgCUCG-GGC- -5'
15687 3' -57.7 NC_004065.1 + 96511 0.71 0.679603
Target:  5'- uUCCUCCUCGuCGGAggacgaCGaCGAGUCCGa -3'
miRNA:   3'- -AGGAGGAGUcGCCUa-----GUaGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 33324 0.71 0.708585
Target:  5'- aUUCUCCUCgaagaGGCGGAUCccGUCGGGguUCCGa -3'
miRNA:   3'- -AGGAGGAG-----UCGCCUAG--UAGCUC--GGGC- -5'
15687 3' -57.7 NC_004065.1 + 201310 0.7 0.737032
Target:  5'- cUCCUCCUCGGacaGGAUC-UCc-GCCCu -3'
miRNA:   3'- -AGGAGGAGUCg--CCUAGuAGcuCGGGc -5'
15687 3' -57.7 NC_004065.1 + 76732 0.7 0.75559
Target:  5'- -aCUCCUCGGCGGGga--CGGGCgCGg -3'
miRNA:   3'- agGAGGAGUCGCCUaguaGCUCGgGC- -5'
15687 3' -57.7 NC_004065.1 + 119831 0.7 0.75559
Target:  5'- -aCUCgC-CAGCaGGAucuUCGUCGAGCCCa -3'
miRNA:   3'- agGAG-GaGUCG-CCU---AGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 163146 0.7 0.764723
Target:  5'- gUCUCCggaCAGCGGcUCGUCGuccggaucggcGGCCCa -3'
miRNA:   3'- aGGAGGa--GUCGCCuAGUAGC-----------UCGGGc -5'
15687 3' -57.7 NC_004065.1 + 194785 0.7 0.764723
Target:  5'- aCCgggUCgcgCAGgGcGAUCGUCGAGCCCc -3'
miRNA:   3'- aGGa--GGa--GUCgC-CUAGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 73109 0.69 0.782656
Target:  5'- cUCUUCCUCgucggugccGGCGGAggAUCGGGaCCCc -3'
miRNA:   3'- -AGGAGGAG---------UCGCCUagUAGCUC-GGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.