miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 3' -57.7 NC_004065.1 + 76732 0.7 0.75559
Target:  5'- -aCUCCUCGGCGGGga--CGGGCgCGg -3'
miRNA:   3'- agGAGGAGUCGCCUaguaGCUCGgGC- -5'
15687 3' -57.7 NC_004065.1 + 119831 0.7 0.75559
Target:  5'- -aCUCgC-CAGCaGGAucuUCGUCGAGCCCa -3'
miRNA:   3'- agGAG-GaGUCG-CCU---AGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 163146 0.7 0.764723
Target:  5'- gUCUCCggaCAGCGGcUCGUCGuccggaucggcGGCCCa -3'
miRNA:   3'- aGGAGGa--GUCGCCuAGUAGC-----------UCGGGc -5'
15687 3' -57.7 NC_004065.1 + 194785 0.7 0.764723
Target:  5'- aCCgggUCgcgCAGgGcGAUCGUCGAGCCCc -3'
miRNA:   3'- aGGa--GGa--GUCgC-CUAGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 161504 0.68 0.848058
Target:  5'- gCCUCCUCGGCcuccgGGAgaugCGUCcgccgccucaccuGAGCCUGc -3'
miRNA:   3'- aGGAGGAGUCG-----CCUa---GUAG-------------CUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 47608 0.68 0.836405
Target:  5'- cUCCUCCUCucgAuacaucgccgacacgGUGGAUCGUUGAuCCCGa -3'
miRNA:   3'- -AGGAGGAG---U---------------CGCCUAGUAGCUcGGGC- -5'
15687 3' -57.7 NC_004065.1 + 86048 0.69 0.808605
Target:  5'- aCCaUCUUCuGCaGGUCGUUGAGCUCGc -3'
miRNA:   3'- aGG-AGGAGuCGcCUAGUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 207531 0.69 0.800092
Target:  5'- gUCCUCCUCGccGCGcGcuccgcGUCGUCGcGCCUGa -3'
miRNA:   3'- -AGGAGGAGU--CGC-C------UAGUAGCuCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 150253 0.69 0.800092
Target:  5'- cUCCUCCUCga-GGAUCGU-GGGCuCCGc -3'
miRNA:   3'- -AGGAGGAGucgCCUAGUAgCUCG-GGC- -5'
15687 3' -57.7 NC_004065.1 + 73109 0.69 0.782656
Target:  5'- cUCUUCCUCgucggugccGGCGGAggAUCGGGaCCCc -3'
miRNA:   3'- -AGGAGGAG---------UCGCCUagUAGCUC-GGGc -5'
15687 3' -57.7 NC_004065.1 + 137267 0.69 0.808605
Target:  5'- --gUCCUCAGCgGGAUC-UCGucGCCCu -3'
miRNA:   3'- aggAGGAGUCG-CCUAGuAGCu-CGGGc -5'
15687 3' -57.7 NC_004065.1 + 145953 0.7 0.754671
Target:  5'- cUCCUCCUacccccgacccguUAGCGGcgGUCGUCGAaUCCGg -3'
miRNA:   3'- -AGGAGGA-------------GUCGCC--UAGUAGCUcGGGC- -5'
15687 3' -57.7 NC_004065.1 + 32599 0.7 0.746357
Target:  5'- aCgUCCccaAGCGGGagcUCGUCGAGCUCGu -3'
miRNA:   3'- aGgAGGag-UCGCCU---AGUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 31692 0.7 0.727623
Target:  5'- gUCCUUCagcCAGUGGugccCGUCGAGCUCGg -3'
miRNA:   3'- -AGGAGGa--GUCGCCua--GUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 118271 0.7 0.718138
Target:  5'- aUCCUCCgUCGGgaGGAggaCGagGAGCCCGa -3'
miRNA:   3'- -AGGAGG-AGUCg-CCUa--GUagCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 149663 0.7 0.718138
Target:  5'- uUCCUCa-CGGCGG-UCAUCGAGUUCc -3'
miRNA:   3'- -AGGAGgaGUCGCCuAGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 24336 0.71 0.679603
Target:  5'- aCgUCCUCGGCaucAUCAUCGAGCCg- -3'
miRNA:   3'- aGgAGGAGUCGcc-UAGUAGCUCGGgc -5'
15687 3' -57.7 NC_004065.1 + 127733 0.71 0.679603
Target:  5'- gUCCUCgUCGGUGGcgCcgggGUCGGGuCCCGc -3'
miRNA:   3'- -AGGAGgAGUCGCCuaG----UAGCUC-GGGC- -5'
15687 3' -57.7 NC_004065.1 + 120060 0.83 0.16532
Target:  5'- uUCCUCC--AGCGGGUCuucuUCGAGCCCGa -3'
miRNA:   3'- -AGGAGGagUCGCCUAGu---AGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 191350 0.66 0.930905
Target:  5'- gUUUCgUCGGCaGGUCggguGUCGAGCUCGa -3'
miRNA:   3'- aGGAGgAGUCGcCUAG----UAGCUCGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.