Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15687 | 3' | -57.7 | NC_004065.1 | + | 30186 | 1.09 | 0.003215 |
Target: 5'- cUCCUCCUCAGCGGAUCAUCGAGCCCGa -3' miRNA: 3'- -AGGAGGAGUCGCCUAGUAGCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 77241 | 0.67 | 0.884537 |
Target: 5'- cUCCUCCUcCAGC--AUCGUCucccGCCCGg -3' miRNA: 3'- -AGGAGGA-GUCGccUAGUAGcu--CGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 222719 | 0.67 | 0.891082 |
Target: 5'- aCCUCCccgUCuGCGuaucgugcGUCGUCGGGUCCGg -3' miRNA: 3'- aGGAGG---AGuCGCc-------UAGUAGCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 191350 | 0.66 | 0.930905 |
Target: 5'- gUUUCgUCGGCaGGUCggguGUCGAGCUCGa -3' miRNA: 3'- aGGAGgAGUCGcCUAG----UAGCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 149663 | 0.7 | 0.718138 |
Target: 5'- uUCCUCa-CGGCGG-UCAUCGAGUUCc -3' miRNA: 3'- -AGGAGgaGUCGCCuAGUAGCUCGGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 118271 | 0.7 | 0.718138 |
Target: 5'- aUCCUCCgUCGGgaGGAggaCGagGAGCCCGa -3' miRNA: 3'- -AGGAGG-AGUCg-CCUa--GUagCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 32599 | 0.7 | 0.746357 |
Target: 5'- aCgUCCccaAGCGGGagcUCGUCGAGCUCGu -3' miRNA: 3'- aGgAGGag-UCGCCU---AGUAGCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 145953 | 0.7 | 0.754671 |
Target: 5'- cUCCUCCUacccccgacccguUAGCGGcgGUCGUCGAaUCCGg -3' miRNA: 3'- -AGGAGGA-------------GUCGCC--UAGUAGCUcGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 75677 | 0.68 | 0.84882 |
Target: 5'- cCCg-UUCGGCGGGUCAUCcguGAGCUCu -3' miRNA: 3'- aGGagGAGUCGCCUAGUAG---CUCGGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 109940 | 0.67 | 0.884537 |
Target: 5'- gCgaUCUCGGCGGcgauGUCGUCGGagagcGCCCGg -3' miRNA: 3'- aGgaGGAGUCGCC----UAGUAGCU-----CGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 18818 | 0.68 | 0.856347 |
Target: 5'- -gCUCCUCGGaggagucgcCGGAgaggucgucggCGUCGAGUCCGa -3' miRNA: 3'- agGAGGAGUC---------GCCUa----------GUAGCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 65907 | 0.69 | 0.808605 |
Target: 5'- aUCUUCCUgCGGCGGcagCGgcagCGGGUCCGu -3' miRNA: 3'- -AGGAGGA-GUCGCCua-GUa---GCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 120060 | 0.83 | 0.16532 |
Target: 5'- uUCCUCC--AGCGGGUCuucuUCGAGCCCGa -3' miRNA: 3'- -AGGAGGagUCGCCUAGu---AGCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 78773 | 0.67 | 0.870835 |
Target: 5'- -gCUCCUCAGCGG-UguUCuGAGgCCGc -3' miRNA: 3'- agGAGGAGUCGCCuAguAG-CUCgGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 127733 | 0.71 | 0.679603 |
Target: 5'- gUCCUCgUCGGUGGcgCcgggGUCGGGuCCCGc -3' miRNA: 3'- -AGGAGgAGUCGCCuaG----UAGCUC-GGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 137267 | 0.69 | 0.808605 |
Target: 5'- --gUCCUCAGCgGGAUC-UCGucGCCCu -3' miRNA: 3'- aggAGGAGUCG-CCUAGuAGCu-CGGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 31409 | 0.67 | 0.877787 |
Target: 5'- -gCUCCggccgCGGCGGu--GUCGAuGCCCGa -3' miRNA: 3'- agGAGGa----GUCGCCuagUAGCU-CGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 34102 | 0.67 | 0.891082 |
Target: 5'- -gCUCCUCAG-GGAg-AUCGAGUUCGu -3' miRNA: 3'- agGAGGAGUCgCCUagUAGCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 24336 | 0.71 | 0.679603 |
Target: 5'- aCgUCCUCGGCaucAUCAUCGAGCCg- -3' miRNA: 3'- aGgAGGAGUCGcc-UAGUAGCUCGGgc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 31692 | 0.7 | 0.727623 |
Target: 5'- gUCCUUCagcCAGUGGugccCGUCGAGCUCGg -3' miRNA: 3'- -AGGAGGa--GUCGCCua--GUAGCUCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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