miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 3' -57.7 NC_004065.1 + 191350 0.66 0.930905
Target:  5'- gUUUCgUCGGCaGGUCggguGUCGAGCUCGa -3'
miRNA:   3'- aGGAGgAGUCGcCUAG----UAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 78773 0.67 0.870835
Target:  5'- -gCUCCUCAGCGG-UguUCuGAGgCCGc -3'
miRNA:   3'- agGAGGAGUCGCCuAguAG-CUCgGGC- -5'
15687 3' -57.7 NC_004065.1 + 77241 0.67 0.884537
Target:  5'- cUCCUCCUcCAGC--AUCGUCucccGCCCGg -3'
miRNA:   3'- -AGGAGGA-GUCGccUAGUAGcu--CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 58967 0.66 0.915142
Target:  5'- aCCUcggaCCUCAGCGccaaGGUCugcauGUCGGcGCCCGa -3'
miRNA:   3'- aGGA----GGAGUCGC----CUAG-----UAGCU-CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 75677 0.68 0.84882
Target:  5'- cCCg-UUCGGCGGGUCAUCcguGAGCUCu -3'
miRNA:   3'- aGGagGAGUCGCCUAGUAG---CUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 112566 0.66 0.92587
Target:  5'- uUCCUCCUUcuuguccaugGGCGGcgugcugCGUCGcaacguGCCCGu -3'
miRNA:   3'- -AGGAGGAG----------UCGCCua-----GUAGCu-----CGGGC- -5'
15687 3' -57.7 NC_004065.1 + 118021 0.68 0.84882
Target:  5'- gUCCUCCUCccgacGGaGGAUCAggCG-GCCCu -3'
miRNA:   3'- -AGGAGGAG-----UCgCCUAGUa-GCuCGGGc -5'
15687 3' -57.7 NC_004065.1 + 33324 0.71 0.708585
Target:  5'- aUUCUCCUCgaagaGGCGGAUCccGUCGGGguUCCGa -3'
miRNA:   3'- -AGGAGGAG-----UCGCCUAG--UAGCUC--GGGC- -5'
15687 3' -57.7 NC_004065.1 + 161504 0.68 0.848058
Target:  5'- gCCUCCUCGGCcuccgGGAgaugCGUCcgccgccucaccuGAGCCUGc -3'
miRNA:   3'- aGGAGGAGUCG-----CCUa---GUAG-------------CUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 47608 0.68 0.836405
Target:  5'- cUCCUCCUCucgAuacaucgccgacacgGUGGAUCGUUGAuCCCGa -3'
miRNA:   3'- -AGGAGGAG---U---------------CGCCUAGUAGCUcGGGC- -5'
15687 3' -57.7 NC_004065.1 + 86048 0.69 0.808605
Target:  5'- aCCaUCUUCuGCaGGUCGUUGAGCUCGc -3'
miRNA:   3'- aGG-AGGAGuCGcCUAGUAGCUCGGGC- -5'
15687 3' -57.7 NC_004065.1 + 163146 0.7 0.764723
Target:  5'- gUCUCCggaCAGCGGcUCGUCGuccggaucggcGGCCCa -3'
miRNA:   3'- aGGAGGa--GUCGCCuAGUAGC-----------UCGGGc -5'
15687 3' -57.7 NC_004065.1 + 163819 0.66 0.915142
Target:  5'- gUUCUCCacgCAGCGGGggg--GAGCCCa -3'
miRNA:   3'- -AGGAGGa--GUCGCCUaguagCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 186356 0.66 0.915142
Target:  5'- cCCUCgagguuCUCGGCGuGAUCcUCGGaCCCGg -3'
miRNA:   3'- aGGAG------GAGUCGC-CUAGuAGCUcGGGC- -5'
15687 3' -57.7 NC_004065.1 + 202023 0.66 0.924837
Target:  5'- gUCCUCCUCGGCGcuguagacgaacAUCcUCGAcuccuuGCCCa -3'
miRNA:   3'- -AGGAGGAGUCGCc-----------UAGuAGCU------CGGGc -5'
15687 3' -57.7 NC_004065.1 + 119831 0.7 0.75559
Target:  5'- -aCUCgC-CAGCaGGAucuUCGUCGAGCCCa -3'
miRNA:   3'- agGAG-GaGUCG-CCU---AGUAGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 96631 0.66 0.930905
Target:  5'- gUCCUCgUCgccGGCGG-UCG-CGAGCUCu -3'
miRNA:   3'- -AGGAGgAG---UCGCCuAGUaGCUCGGGc -5'
15687 3' -57.7 NC_004065.1 + 213429 0.66 0.92587
Target:  5'- gCgUCCgCAGCGGuagaggUAUCGGGCuCCGu -3'
miRNA:   3'- aGgAGGaGUCGCCua----GUAGCUCG-GGC- -5'
15687 3' -57.7 NC_004065.1 + 181264 0.66 0.930905
Target:  5'- cUCUUCCUCAGUGGgAUCAUCauaCUCa -3'
miRNA:   3'- -AGGAGGAGUCGCC-UAGUAGcucGGGc -5'
15687 3' -57.7 NC_004065.1 + 163040 0.66 0.92587
Target:  5'- aCCUCCgUCAGUGGAccuaCGAgagcGCCCGc -3'
miRNA:   3'- aGGAGG-AGUCGCCUaguaGCU----CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.