Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15687 | 3' | -57.7 | NC_004065.1 | + | 96511 | 0.71 | 0.679603 |
Target: 5'- uUCCUCCUCGuCGGAggacgaCGaCGAGUCCGa -3' miRNA: 3'- -AGGAGGAGUcGCCUa-----GUaGCUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 161504 | 0.68 | 0.848058 |
Target: 5'- gCCUCCUCGGCcuccgGGAgaugCGUCcgccgccucaccuGAGCCUGc -3' miRNA: 3'- aGGAGGAGUCG-----CCUa---GUAG-------------CUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 118021 | 0.68 | 0.84882 |
Target: 5'- gUCCUCCUCccgacGGaGGAUCAggCG-GCCCu -3' miRNA: 3'- -AGGAGGAG-----UCgCCUAGUa-GCuCGGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 163040 | 0.66 | 0.92587 |
Target: 5'- aCCUCCgUCAGUGGAccuaCGAgagcGCCCGc -3' miRNA: 3'- aGGAGG-AGUCGCCUaguaGCU----CGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 112566 | 0.66 | 0.92587 |
Target: 5'- uUCCUCCUUcuuguccaugGGCGGcgugcugCGUCGcaacguGCCCGu -3' miRNA: 3'- -AGGAGGAG----------UCGCCua-----GUAGCu-----CGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 213429 | 0.66 | 0.92587 |
Target: 5'- gCgUCCgCAGCGGuagaggUAUCGGGCuCCGu -3' miRNA: 3'- aGgAGGaGUCGCCua----GUAGCUCG-GGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 202023 | 0.66 | 0.924837 |
Target: 5'- gUCCUCCUCGGCGcuguagacgaacAUCcUCGAcuccuuGCCCa -3' miRNA: 3'- -AGGAGGAGUCGCc-----------UAGuAGCU------CGGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 186356 | 0.66 | 0.915142 |
Target: 5'- cCCUCgagguuCUCGGCGuGAUCcUCGGaCCCGg -3' miRNA: 3'- aGGAG------GAGUCGC-CUAGuAGCUcGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 118645 | 0.66 | 0.90945 |
Target: 5'- cUCCUCCUCGGCgucGGA-CGaCGAcGCCuCGu -3' miRNA: 3'- -AGGAGGAGUCG---CCUaGUaGCU-CGG-GC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 108741 | 0.66 | 0.90945 |
Target: 5'- gUCgC-CCUCAcGCGGGUCuUCaAGCCCa -3' miRNA: 3'- -AG-GaGGAGU-CGCCUAGuAGcUCGGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 99527 | 0.66 | 0.903542 |
Target: 5'- aCCUCCgUCAGCuGGUCggCGcuCCCGu -3' miRNA: 3'- aGGAGG-AGUCGcCUAGuaGCucGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 20823 | 0.67 | 0.891082 |
Target: 5'- gUCCUUCUCga-GGGUCGUCGAggaaaGCgCCGg -3' miRNA: 3'- -AGGAGGAGucgCCUAGUAGCU-----CG-GGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 42817 | 0.67 | 0.891082 |
Target: 5'- cUCUUCCUCAuccucccccguGCGGAgggUCGgUCGAGaCCCc -3' miRNA: 3'- -AGGAGGAGU-----------CGCCU---AGU-AGCUC-GGGc -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 32287 | 0.67 | 0.863687 |
Target: 5'- gUCCgcgUCCUCGGUcuccUCGUCgGAGCCCGa -3' miRNA: 3'- -AGG---AGGAGUCGccu-AGUAG-CUCGGGC- -5' |
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15687 | 3' | -57.7 | NC_004065.1 | + | 124642 | 0.74 | 0.533688 |
Target: 5'- gCCUCCUCGcCGGccGUCAgCGAGUCCGg -3' miRNA: 3'- aGGAGGAGUcGCC--UAGUaGCUCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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