miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 5' -55.5 NC_004065.1 + 67475 0.66 0.971698
Target:  5'- cCGCGGG-CGUCu-CGAUCaCCgugggGAUCUCc -3'
miRNA:   3'- -GCGCCCgGCAGuuGUUAG-GG-----CUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 41706 0.66 0.971698
Target:  5'- aCGCGgagacGGCCaUCAACAcggugaucAUCCUGAUCg- -3'
miRNA:   3'- -GCGC-----CCGGcAGUUGU--------UAGGGCUAGag -5'
15687 5' -55.5 NC_004065.1 + 18471 0.66 0.971424
Target:  5'- gCGCGGGaggaagagccgacUUGUCGACAGUCgCGAgccguccagCUCa -3'
miRNA:   3'- -GCGCCC-------------GGCAGUUGUUAGgGCUa--------GAG- -5'
15687 5' -55.5 NC_004065.1 + 124312 0.66 0.968874
Target:  5'- aCGCGGaugucgugguucGCCGUCGccgcCAGUCCCgGGUC-Cg -3'
miRNA:   3'- -GCGCC------------CGGCAGUu---GUUAGGG-CUAGaG- -5'
15687 5' -55.5 NC_004065.1 + 50339 0.66 0.968874
Target:  5'- aCGCGuGGCCaccgCcGCGAUCCCGAg--- -3'
miRNA:   3'- -GCGC-CCGGca--GuUGUUAGGGCUagag -5'
15687 5' -55.5 NC_004065.1 + 25593 0.66 0.968874
Target:  5'- gGCGG-CUGagCAGCAGg-CCGAUCUCg -3'
miRNA:   3'- gCGCCcGGCa-GUUGUUagGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 195499 0.66 0.968874
Target:  5'- uCGCGGGagcccgCGUCAGagcgCCCGGUCcCg -3'
miRNA:   3'- -GCGCCCg-----GCAGUUguuaGGGCUAGaG- -5'
15687 5' -55.5 NC_004065.1 + 152521 0.66 0.962633
Target:  5'- aGCaGGCCGUCuACGccuauUCCCucAUCUCg -3'
miRNA:   3'- gCGcCCGGCAGuUGUu----AGGGc-UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 49847 0.66 0.962633
Target:  5'- aGCGGuuCGUCAGgGA-CCCGGgcuuUCUCg -3'
miRNA:   3'- gCGCCcgGCAGUUgUUaGGGCU----AGAG- -5'
15687 5' -55.5 NC_004065.1 + 27900 0.66 0.962633
Target:  5'- uGaCGGGCCG-CAGCAccCCCGcgCa- -3'
miRNA:   3'- gC-GCCCGGCaGUUGUuaGGGCuaGag -5'
15687 5' -55.5 NC_004065.1 + 61444 0.66 0.959208
Target:  5'- cCGCGGguccuggccuacGCCGgguUCGGCGGUuccaaCCCGAUCUUc -3'
miRNA:   3'- -GCGCC------------CGGC---AGUUGUUA-----GGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 24820 0.66 0.959208
Target:  5'- gCGCGGaCCG-C-GCGAUCCCGAcgaggggcucgUCUCc -3'
miRNA:   3'- -GCGCCcGGCaGuUGUUAGGGCU-----------AGAG- -5'
15687 5' -55.5 NC_004065.1 + 192237 0.66 0.959208
Target:  5'- uCGuCGGuuCCGUCGACcuuuAUUCUGAUCUCu -3'
miRNA:   3'- -GC-GCCc-GGCAGUUGu---UAGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 215029 0.66 0.959208
Target:  5'- --aGGGCCGUCAcccACGAgcUCCCucacGGUCUg -3'
miRNA:   3'- gcgCCCGGCAGU---UGUU--AGGG----CUAGAg -5'
15687 5' -55.5 NC_004065.1 + 121564 0.67 0.955572
Target:  5'- aCGCaGGGCgccugCGgacUCAGCcgGAUCCCGGUCUg -3'
miRNA:   3'- -GCG-CCCG-----GC---AGUUG--UUAGGGCUAGAg -5'
15687 5' -55.5 NC_004065.1 + 190168 0.67 0.951722
Target:  5'- aCGCGGGUgcaGuUCGAUGAUCagauCGAUCUCc -3'
miRNA:   3'- -GCGCCCGg--C-AGUUGUUAGg---GCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 46270 0.67 0.947655
Target:  5'- aCG-GGGCCaUCGGCAGaCCCGAgUUCa -3'
miRNA:   3'- -GCgCCCGGcAGUUGUUaGGGCUaGAG- -5'
15687 5' -55.5 NC_004065.1 + 34155 0.67 0.938858
Target:  5'- gGCGGGUa--CGGC-AUCCgCGGUCUCa -3'
miRNA:   3'- gCGCCCGgcaGUUGuUAGG-GCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 58604 0.67 0.934124
Target:  5'- gGCGGaGUCGagaUCGACGcgcgcggcggaGUCgCCGGUCUCg -3'
miRNA:   3'- gCGCC-CGGC---AGUUGU-----------UAG-GGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 146784 0.68 0.929164
Target:  5'- gGCaGGCCGacCAAgGA-CCUGAUCUCg -3'
miRNA:   3'- gCGcCCGGCa-GUUgUUaGGGCUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.