miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 5' -55.5 NC_004065.1 + 30151 1.09 0.00497
Target:  5'- gCGCGGGCCGUCAACAAUCCCGAUCUCu -3'
miRNA:   3'- -GCGCCCGGCAGUUGUUAGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 169120 0.82 0.250311
Target:  5'- aCGCGGGCCGcggcCAGCAGuUCCCGAgacgCUCg -3'
miRNA:   3'- -GCGCCCGGCa---GUUGUU-AGGGCUa---GAG- -5'
15687 5' -55.5 NC_004065.1 + 197376 0.79 0.366372
Target:  5'- cCGCGGGCCGUgGcgauguugacagGCAGUCCCGGUgaCg -3'
miRNA:   3'- -GCGCCCGGCAgU------------UGUUAGGGCUAgaG- -5'
15687 5' -55.5 NC_004065.1 + 201738 0.76 0.54332
Target:  5'- cCGCGGGCCGUCGgguCGA-CCgGgAUCUCg -3'
miRNA:   3'- -GCGCCCGGCAGUu--GUUaGGgC-UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 124648 0.75 0.592322
Target:  5'- uCGCcGGCCGUCAGCgAGUCCgGGUC-Cg -3'
miRNA:   3'- -GCGcCCGGCAGUUG-UUAGGgCUAGaG- -5'
15687 5' -55.5 NC_004065.1 + 225477 0.73 0.671773
Target:  5'- uCGCGuGGCuCGUCAGCcgcCCCGcgCUCg -3'
miRNA:   3'- -GCGC-CCG-GCAGUUGuuaGGGCuaGAG- -5'
15687 5' -55.5 NC_004065.1 + 139646 0.73 0.691483
Target:  5'- gCGCGGGCCGUCG-CGA-CCCcAUCa- -3'
miRNA:   3'- -GCGCCCGGCAGUuGUUaGGGcUAGag -5'
15687 5' -55.5 NC_004065.1 + 170841 0.73 0.691483
Target:  5'- gGCGGGCCuUCAACGuccCCCGAUgaCg -3'
miRNA:   3'- gCGCCCGGcAGUUGUua-GGGCUAgaG- -5'
15687 5' -55.5 NC_004065.1 + 83437 0.73 0.711006
Target:  5'- aGCGGGCCGcCGGgAGcgCCUGGUCUg -3'
miRNA:   3'- gCGCCCGGCaGUUgUUa-GGGCUAGAg -5'
15687 5' -55.5 NC_004065.1 + 226719 0.72 0.720676
Target:  5'- aGCGGcGCUGgcagaaGGCGAgCCCGGUCUCg -3'
miRNA:   3'- gCGCC-CGGCag----UUGUUaGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 60717 0.72 0.747345
Target:  5'- gCGCGGcagucgagagcuCCGUCGACGugGUCCuCGGUCUCg -3'
miRNA:   3'- -GCGCCc-----------GGCAGUUGU--UAGG-GCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 52151 0.72 0.749224
Target:  5'- aGCGGGCCGaUCAcaGCugcuUCCCGAgcagUUCu -3'
miRNA:   3'- gCGCCCGGC-AGU--UGuu--AGGGCUa---GAG- -5'
15687 5' -55.5 NC_004065.1 + 22909 0.72 0.758556
Target:  5'- aCGCGGucaguggcgGCgGUCGGCGGUUCCG-UCUCg -3'
miRNA:   3'- -GCGCC---------CGgCAGUUGUUAGGGCuAGAG- -5'
15687 5' -55.5 NC_004065.1 + 151088 0.71 0.776896
Target:  5'- gCGCGGGCC-UgGugGcgCCCGAgCUCg -3'
miRNA:   3'- -GCGCCCGGcAgUugUuaGGGCUaGAG- -5'
15687 5' -55.5 NC_004065.1 + 20312 0.71 0.798251
Target:  5'- cCGCGGcagaGCCGguaggugggaauaauUCAACcg-CCCGAUCUCa -3'
miRNA:   3'- -GCGCC----CGGC---------------AGUUGuuaGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 31308 0.71 0.812041
Target:  5'- gGCGuacGCCGUCAACAGacUCCUGGcgCUCg -3'
miRNA:   3'- gCGCc--CGGCAGUUGUU--AGGGCUa-GAG- -5'
15687 5' -55.5 NC_004065.1 + 42925 0.7 0.843938
Target:  5'- aCGCGaGCagcuucgCGUCAGC-GUCCCGAUCUUu -3'
miRNA:   3'- -GCGCcCG-------GCAGUUGuUAGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 77700 0.7 0.844721
Target:  5'- gCGUGGGCCccguguuccuGUCGcCGAUCCCGAcgUUCc -3'
miRNA:   3'- -GCGCCCGG----------CAGUuGUUAGGGCUa-GAG- -5'
15687 5' -55.5 NC_004065.1 + 92461 0.7 0.844721
Target:  5'- uGUGGGCCuGUUcGCGG-CCCGcGUCUCg -3'
miRNA:   3'- gCGCCCGG-CAGuUGUUaGGGC-UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 83672 0.7 0.852452
Target:  5'- uCG-GGGCCGUCGGCGGggCCGuGUCUUc -3'
miRNA:   3'- -GCgCCCGGCAGUUGUUagGGC-UAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.