Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15687 | 5' | -55.5 | NC_004065.1 | + | 145178 | 0.68 | 0.929164 |
Target: 5'- aCGUGGGagagCGUCAugAcgCCCGcUUUCg -3' miRNA: 3'- -GCGCCCg---GCAGUugUuaGGGCuAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 55652 | 0.68 | 0.923979 |
Target: 5'- aGaCGGGCUcgaGUCGGCAcuggCCGGUCUCg -3' miRNA: 3'- gC-GCCCGG---CAGUUGUuag-GGCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 94845 | 0.68 | 0.923448 |
Target: 5'- cCGCuuagGGGCUGUCAAUcaucuuaGGUCCCGAagagccCUCa -3' miRNA: 3'- -GCG----CCCGGCAGUUG-------UUAGGGCUa-----GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 17787 | 0.68 | 0.912931 |
Target: 5'- aGCGgguGGCCGUCGcguuuggcGCGAUCCCGcgUgaUCa -3' miRNA: 3'- gCGC---CCGGCAGU--------UGUUAGGGCuaG--AG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 221250 | 0.69 | 0.900987 |
Target: 5'- uGCGGGCgGUCcuucGCAccauUCCCGaAUCUg -3' miRNA: 3'- gCGCCCGgCAGu---UGUu---AGGGC-UAGAg -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 1778 | 0.69 | 0.900987 |
Target: 5'- uCGUGuaUCGgaugCGACAAUCCCGGUCUg -3' miRNA: 3'- -GCGCccGGCa---GUUGUUAGGGCUAGAg -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 111912 | 0.69 | 0.900987 |
Target: 5'- aGCGuGGUCuggcUCAGCGAgugUCCGAUCUCc -3' miRNA: 3'- gCGC-CCGGc---AGUUGUUa--GGGCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 79170 | 0.69 | 0.881431 |
Target: 5'- cCGac-GCCGUCGGCAGUCUCGucGUCUCc -3' miRNA: 3'- -GCgccCGGCAGUUGUUAGGGC--UAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 92036 | 0.69 | 0.881431 |
Target: 5'- cCGCGGGCUcUUGGCGcgCUCGAggcaUCUCa -3' miRNA: 3'- -GCGCCCGGcAGUUGUuaGGGCU----AGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 110296 | 0.69 | 0.874488 |
Target: 5'- gCGCGacccGGCCGUC-ACGGUCUCGcagCUCu -3' miRNA: 3'- -GCGC----CCGGCAGuUGUUAGGGCua-GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 65885 | 0.69 | 0.874488 |
Target: 5'- aGCGGGuCCGUCAGguccUCCUGGUC-Ca -3' miRNA: 3'- gCGCCC-GGCAGUUguu-AGGGCUAGaG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 188309 | 0.69 | 0.874488 |
Target: 5'- -aCGGGgCGUaCGACGGUCCUGuuuUCUCu -3' miRNA: 3'- gcGCCCgGCA-GUUGUUAGGGCu--AGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 17233 | 0.69 | 0.867341 |
Target: 5'- cCGaaaGGGCC-UCAGCug-CCuCGAUCUCg -3' miRNA: 3'- -GCg--CCCGGcAGUUGuuaGG-GCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 196246 | 0.69 | 0.867341 |
Target: 5'- uGuCGGGCCGaaAGCGGUCCCGGc--- -3' miRNA: 3'- gC-GCCCGGCagUUGUUAGGGCUagag -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 114179 | 0.7 | 0.859993 |
Target: 5'- aGCGccgcGUCGUCGACAcgCgCGAUCUCc -3' miRNA: 3'- gCGCc---CGGCAGUUGUuaGgGCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 164193 | 0.7 | 0.859993 |
Target: 5'- uCGCGGGCCcUCAugGAUCUCGc-CUUu -3' miRNA: 3'- -GCGCCCGGcAGUugUUAGGGCuaGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 83672 | 0.7 | 0.852452 |
Target: 5'- uCG-GGGCCGUCGGCGGggCCGuGUCUUc -3' miRNA: 3'- -GCgCCCGGCAGUUGUUagGGC-UAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 77700 | 0.7 | 0.844721 |
Target: 5'- gCGUGGGCCccguguuccuGUCGcCGAUCCCGAcgUUCc -3' miRNA: 3'- -GCGCCCGG----------CAGUuGUUAGGGCUa-GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 92461 | 0.7 | 0.844721 |
Target: 5'- uGUGGGCCuGUUcGCGG-CCCGcGUCUCg -3' miRNA: 3'- gCGCCCGG-CAGuUGUUaGGGC-UAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 42925 | 0.7 | 0.843938 |
Target: 5'- aCGCGaGCagcuucgCGUCAGC-GUCCCGAUCUUu -3' miRNA: 3'- -GCGCcCG-------GCAGUUGuUAGGGCUAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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