miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 5' -55.5 NC_004065.1 + 1778 0.69 0.900987
Target:  5'- uCGUGuaUCGgaugCGACAAUCCCGGUCUg -3'
miRNA:   3'- -GCGCccGGCa---GUUGUUAGGGCUAGAg -5'
15687 5' -55.5 NC_004065.1 + 17233 0.69 0.867341
Target:  5'- cCGaaaGGGCC-UCAGCug-CCuCGAUCUCg -3'
miRNA:   3'- -GCg--CCCGGcAGUUGuuaGG-GCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 17787 0.68 0.912931
Target:  5'- aGCGgguGGCCGUCGcguuuggcGCGAUCCCGcgUgaUCa -3'
miRNA:   3'- gCGC---CCGGCAGU--------UGUUAGGGCuaG--AG- -5'
15687 5' -55.5 NC_004065.1 + 18471 0.66 0.971424
Target:  5'- gCGCGGGaggaagagccgacUUGUCGACAGUCgCGAgccguccagCUCa -3'
miRNA:   3'- -GCGCCC-------------GGCAGUUGUUAGgGCUa--------GAG- -5'
15687 5' -55.5 NC_004065.1 + 20312 0.71 0.798251
Target:  5'- cCGCGGcagaGCCGguaggugggaauaauUCAACcg-CCCGAUCUCa -3'
miRNA:   3'- -GCGCC----CGGC---------------AGUUGuuaGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 22909 0.72 0.758556
Target:  5'- aCGCGGucaguggcgGCgGUCGGCGGUUCCG-UCUCg -3'
miRNA:   3'- -GCGCC---------CGgCAGUUGUUAGGGCuAGAG- -5'
15687 5' -55.5 NC_004065.1 + 24820 0.66 0.959208
Target:  5'- gCGCGGaCCG-C-GCGAUCCCGAcgaggggcucgUCUCc -3'
miRNA:   3'- -GCGCCcGGCaGuUGUUAGGGCU-----------AGAG- -5'
15687 5' -55.5 NC_004065.1 + 25593 0.66 0.968874
Target:  5'- gGCGG-CUGagCAGCAGg-CCGAUCUCg -3'
miRNA:   3'- gCGCCcGGCa-GUUGUUagGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 27900 0.66 0.962633
Target:  5'- uGaCGGGCCG-CAGCAccCCCGcgCa- -3'
miRNA:   3'- gC-GCCCGGCaGUUGUuaGGGCuaGag -5'
15687 5' -55.5 NC_004065.1 + 30151 1.09 0.00497
Target:  5'- gCGCGGGCCGUCAACAAUCCCGAUCUCu -3'
miRNA:   3'- -GCGCCCGGCAGUUGUUAGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 31308 0.71 0.812041
Target:  5'- gGCGuacGCCGUCAACAGacUCCUGGcgCUCg -3'
miRNA:   3'- gCGCc--CGGCAGUUGUU--AGGGCUa-GAG- -5'
15687 5' -55.5 NC_004065.1 + 34155 0.67 0.938858
Target:  5'- gGCGGGUa--CGGC-AUCCgCGGUCUCa -3'
miRNA:   3'- gCGCCCGgcaGUUGuUAGG-GCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 41706 0.66 0.971698
Target:  5'- aCGCGgagacGGCCaUCAACAcggugaucAUCCUGAUCg- -3'
miRNA:   3'- -GCGC-----CCGGcAGUUGU--------UAGGGCUAGag -5'
15687 5' -55.5 NC_004065.1 + 42925 0.7 0.843938
Target:  5'- aCGCGaGCagcuucgCGUCAGC-GUCCCGAUCUUu -3'
miRNA:   3'- -GCGCcCG-------GCAGUUGuUAGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 46270 0.67 0.947655
Target:  5'- aCG-GGGCCaUCGGCAGaCCCGAgUUCa -3'
miRNA:   3'- -GCgCCCGGcAGUUGUUaGGGCUaGAG- -5'
15687 5' -55.5 NC_004065.1 + 49847 0.66 0.962633
Target:  5'- aGCGGuuCGUCAGgGA-CCCGGgcuuUCUCg -3'
miRNA:   3'- gCGCCcgGCAGUUgUUaGGGCU----AGAG- -5'
15687 5' -55.5 NC_004065.1 + 50339 0.66 0.968874
Target:  5'- aCGCGuGGCCaccgCcGCGAUCCCGAg--- -3'
miRNA:   3'- -GCGC-CCGGca--GuUGUUAGGGCUagag -5'
15687 5' -55.5 NC_004065.1 + 52151 0.72 0.749224
Target:  5'- aGCGGGCCGaUCAcaGCugcuUCCCGAgcagUUCu -3'
miRNA:   3'- gCGCCCGGC-AGU--UGuu--AGGGCUa---GAG- -5'
15687 5' -55.5 NC_004065.1 + 55652 0.68 0.923979
Target:  5'- aGaCGGGCUcgaGUCGGCAcuggCCGGUCUCg -3'
miRNA:   3'- gC-GCCCGG---CAGUUGUuag-GGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 58604 0.67 0.934124
Target:  5'- gGCGGaGUCGagaUCGACGcgcgcggcggaGUCgCCGGUCUCg -3'
miRNA:   3'- gCGCC-CGGC---AGUUGU-----------UAG-GGCUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.