miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 5' -55.5 NC_004065.1 + 60717 0.72 0.747345
Target:  5'- gCGCGGcagucgagagcuCCGUCGACGugGUCCuCGGUCUCg -3'
miRNA:   3'- -GCGCCc-----------GGCAGUUGU--UAGG-GCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 61444 0.66 0.959208
Target:  5'- cCGCGGguccuggccuacGCCGgguUCGGCGGUuccaaCCCGAUCUUc -3'
miRNA:   3'- -GCGCC------------CGGC---AGUUGUUA-----GGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 65885 0.69 0.874488
Target:  5'- aGCGGGuCCGUCAGguccUCCUGGUC-Ca -3'
miRNA:   3'- gCGCCC-GGCAGUUguu-AGGGCUAGaG- -5'
15687 5' -55.5 NC_004065.1 + 67475 0.66 0.971698
Target:  5'- cCGCGGG-CGUCu-CGAUCaCCgugggGAUCUCc -3'
miRNA:   3'- -GCGCCCgGCAGuuGUUAG-GG-----CUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 77700 0.7 0.844721
Target:  5'- gCGUGGGCCccguguuccuGUCGcCGAUCCCGAcgUUCc -3'
miRNA:   3'- -GCGCCCGG----------CAGUuGUUAGGGCUa-GAG- -5'
15687 5' -55.5 NC_004065.1 + 79170 0.69 0.881431
Target:  5'- cCGac-GCCGUCGGCAGUCUCGucGUCUCc -3'
miRNA:   3'- -GCgccCGGCAGUUGUUAGGGC--UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 83437 0.73 0.711006
Target:  5'- aGCGGGCCGcCGGgAGcgCCUGGUCUg -3'
miRNA:   3'- gCGCCCGGCaGUUgUUa-GGGCUAGAg -5'
15687 5' -55.5 NC_004065.1 + 83672 0.7 0.852452
Target:  5'- uCG-GGGCCGUCGGCGGggCCGuGUCUUc -3'
miRNA:   3'- -GCgCCCGGCAGUUGUUagGGC-UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 92036 0.69 0.881431
Target:  5'- cCGCGGGCUcUUGGCGcgCUCGAggcaUCUCa -3'
miRNA:   3'- -GCGCCCGGcAGUUGUuaGGGCU----AGAG- -5'
15687 5' -55.5 NC_004065.1 + 92461 0.7 0.844721
Target:  5'- uGUGGGCCuGUUcGCGG-CCCGcGUCUCg -3'
miRNA:   3'- gCGCCCGG-CAGuUGUUaGGGC-UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 94845 0.68 0.923448
Target:  5'- cCGCuuagGGGCUGUCAAUcaucuuaGGUCCCGAagagccCUCa -3'
miRNA:   3'- -GCG----CCCGGCAGUUG-------UUAGGGCUa-----GAG- -5'
15687 5' -55.5 NC_004065.1 + 110296 0.69 0.874488
Target:  5'- gCGCGacccGGCCGUC-ACGGUCUCGcagCUCu -3'
miRNA:   3'- -GCGC----CCGGCAGuUGUUAGGGCua-GAG- -5'
15687 5' -55.5 NC_004065.1 + 111912 0.69 0.900987
Target:  5'- aGCGuGGUCuggcUCAGCGAgugUCCGAUCUCc -3'
miRNA:   3'- gCGC-CCGGc---AGUUGUUa--GGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 114179 0.7 0.859993
Target:  5'- aGCGccgcGUCGUCGACAcgCgCGAUCUCc -3'
miRNA:   3'- gCGCc---CGGCAGUUGUuaGgGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 121564 0.67 0.955572
Target:  5'- aCGCaGGGCgccugCGgacUCAGCcgGAUCCCGGUCUg -3'
miRNA:   3'- -GCG-CCCG-----GC---AGUUG--UUAGGGCUAGAg -5'
15687 5' -55.5 NC_004065.1 + 124312 0.66 0.968874
Target:  5'- aCGCGGaugucgugguucGCCGUCGccgcCAGUCCCgGGUC-Cg -3'
miRNA:   3'- -GCGCC------------CGGCAGUu---GUUAGGG-CUAGaG- -5'
15687 5' -55.5 NC_004065.1 + 124648 0.75 0.592322
Target:  5'- uCGCcGGCCGUCAGCgAGUCCgGGUC-Cg -3'
miRNA:   3'- -GCGcCCGGCAGUUG-UUAGGgCUAGaG- -5'
15687 5' -55.5 NC_004065.1 + 139646 0.73 0.691483
Target:  5'- gCGCGGGCCGUCG-CGA-CCCcAUCa- -3'
miRNA:   3'- -GCGCCCGGCAGUuGUUaGGGcUAGag -5'
15687 5' -55.5 NC_004065.1 + 145178 0.68 0.929164
Target:  5'- aCGUGGGagagCGUCAugAcgCCCGcUUUCg -3'
miRNA:   3'- -GCGCCCg---GCAGUugUuaGGGCuAGAG- -5'
15687 5' -55.5 NC_004065.1 + 146784 0.68 0.929164
Target:  5'- gGCaGGCCGacCAAgGA-CCUGAUCUCg -3'
miRNA:   3'- gCGcCCGGCa-GUUgUUaGGGCUAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.