miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15687 5' -55.5 NC_004065.1 + 226719 0.72 0.720676
Target:  5'- aGCGGcGCUGgcagaaGGCGAgCCCGGUCUCg -3'
miRNA:   3'- gCGCC-CGGCag----UUGUUaGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 225477 0.73 0.671773
Target:  5'- uCGCGuGGCuCGUCAGCcgcCCCGcgCUCg -3'
miRNA:   3'- -GCGC-CCG-GCAGUUGuuaGGGCuaGAG- -5'
15687 5' -55.5 NC_004065.1 + 221250 0.69 0.900987
Target:  5'- uGCGGGCgGUCcuucGCAccauUCCCGaAUCUg -3'
miRNA:   3'- gCGCCCGgCAGu---UGUu---AGGGC-UAGAg -5'
15687 5' -55.5 NC_004065.1 + 215029 0.66 0.959208
Target:  5'- --aGGGCCGUCAcccACGAgcUCCCucacGGUCUg -3'
miRNA:   3'- gcgCCCGGCAGU---UGUU--AGGG----CUAGAg -5'
15687 5' -55.5 NC_004065.1 + 201738 0.76 0.54332
Target:  5'- cCGCGGGCCGUCGgguCGA-CCgGgAUCUCg -3'
miRNA:   3'- -GCGCCCGGCAGUu--GUUaGGgC-UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 197376 0.79 0.366372
Target:  5'- cCGCGGGCCGUgGcgauguugacagGCAGUCCCGGUgaCg -3'
miRNA:   3'- -GCGCCCGGCAgU------------UGUUAGGGCUAgaG- -5'
15687 5' -55.5 NC_004065.1 + 196246 0.69 0.867341
Target:  5'- uGuCGGGCCGaaAGCGGUCCCGGc--- -3'
miRNA:   3'- gC-GCCCGGCagUUGUUAGGGCUagag -5'
15687 5' -55.5 NC_004065.1 + 195499 0.66 0.968874
Target:  5'- uCGCGGGagcccgCGUCAGagcgCCCGGUCcCg -3'
miRNA:   3'- -GCGCCCg-----GCAGUUguuaGGGCUAGaG- -5'
15687 5' -55.5 NC_004065.1 + 192237 0.66 0.959208
Target:  5'- uCGuCGGuuCCGUCGACcuuuAUUCUGAUCUCu -3'
miRNA:   3'- -GC-GCCc-GGCAGUUGu---UAGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 190168 0.67 0.951722
Target:  5'- aCGCGGGUgcaGuUCGAUGAUCagauCGAUCUCc -3'
miRNA:   3'- -GCGCCCGg--C-AGUUGUUAGg---GCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 188309 0.69 0.874488
Target:  5'- -aCGGGgCGUaCGACGGUCCUGuuuUCUCu -3'
miRNA:   3'- gcGCCCgGCA-GUUGUUAGGGCu--AGAG- -5'
15687 5' -55.5 NC_004065.1 + 170841 0.73 0.691483
Target:  5'- gGCGGGCCuUCAACGuccCCCGAUgaCg -3'
miRNA:   3'- gCGCCCGGcAGUUGUua-GGGCUAgaG- -5'
15687 5' -55.5 NC_004065.1 + 169120 0.82 0.250311
Target:  5'- aCGCGGGCCGcggcCAGCAGuUCCCGAgacgCUCg -3'
miRNA:   3'- -GCGCCCGGCa---GUUGUU-AGGGCUa---GAG- -5'
15687 5' -55.5 NC_004065.1 + 164193 0.7 0.859993
Target:  5'- uCGCGGGCCcUCAugGAUCUCGc-CUUu -3'
miRNA:   3'- -GCGCCCGGcAGUugUUAGGGCuaGAG- -5'
15687 5' -55.5 NC_004065.1 + 152521 0.66 0.962633
Target:  5'- aGCaGGCCGUCuACGccuauUCCCucAUCUCg -3'
miRNA:   3'- gCGcCCGGCAGuUGUu----AGGGc-UAGAG- -5'
15687 5' -55.5 NC_004065.1 + 151088 0.71 0.776896
Target:  5'- gCGCGGGCC-UgGugGcgCCCGAgCUCg -3'
miRNA:   3'- -GCGCCCGGcAgUugUuaGGGCUaGAG- -5'
15687 5' -55.5 NC_004065.1 + 146784 0.68 0.929164
Target:  5'- gGCaGGCCGacCAAgGA-CCUGAUCUCg -3'
miRNA:   3'- gCGcCCGGCa-GUUgUUaGGGCUAGAG- -5'
15687 5' -55.5 NC_004065.1 + 145178 0.68 0.929164
Target:  5'- aCGUGGGagagCGUCAugAcgCCCGcUUUCg -3'
miRNA:   3'- -GCGCCCg---GCAGUugUuaGGGCuAGAG- -5'
15687 5' -55.5 NC_004065.1 + 139646 0.73 0.691483
Target:  5'- gCGCGGGCCGUCG-CGA-CCCcAUCa- -3'
miRNA:   3'- -GCGCCCGGCAGUuGUUaGGGcUAGag -5'
15687 5' -55.5 NC_004065.1 + 124648 0.75 0.592322
Target:  5'- uCGCcGGCCGUCAGCgAGUCCgGGUC-Cg -3'
miRNA:   3'- -GCGcCCGGCAGUUG-UUAGGgCUAGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.