Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15687 | 5' | -55.5 | NC_004065.1 | + | 124312 | 0.66 | 0.968874 |
Target: 5'- aCGCGGaugucgugguucGCCGUCGccgcCAGUCCCgGGUC-Cg -3' miRNA: 3'- -GCGCC------------CGGCAGUu---GUUAGGG-CUAGaG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 121564 | 0.67 | 0.955572 |
Target: 5'- aCGCaGGGCgccugCGgacUCAGCcgGAUCCCGGUCUg -3' miRNA: 3'- -GCG-CCCG-----GC---AGUUG--UUAGGGCUAGAg -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 114179 | 0.7 | 0.859993 |
Target: 5'- aGCGccgcGUCGUCGACAcgCgCGAUCUCc -3' miRNA: 3'- gCGCc---CGGCAGUUGUuaGgGCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 111912 | 0.69 | 0.900987 |
Target: 5'- aGCGuGGUCuggcUCAGCGAgugUCCGAUCUCc -3' miRNA: 3'- gCGC-CCGGc---AGUUGUUa--GGGCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 110296 | 0.69 | 0.874488 |
Target: 5'- gCGCGacccGGCCGUC-ACGGUCUCGcagCUCu -3' miRNA: 3'- -GCGC----CCGGCAGuUGUUAGGGCua-GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 94845 | 0.68 | 0.923448 |
Target: 5'- cCGCuuagGGGCUGUCAAUcaucuuaGGUCCCGAagagccCUCa -3' miRNA: 3'- -GCG----CCCGGCAGUUG-------UUAGGGCUa-----GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 92461 | 0.7 | 0.844721 |
Target: 5'- uGUGGGCCuGUUcGCGG-CCCGcGUCUCg -3' miRNA: 3'- gCGCCCGG-CAGuUGUUaGGGC-UAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 92036 | 0.69 | 0.881431 |
Target: 5'- cCGCGGGCUcUUGGCGcgCUCGAggcaUCUCa -3' miRNA: 3'- -GCGCCCGGcAGUUGUuaGGGCU----AGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 83672 | 0.7 | 0.852452 |
Target: 5'- uCG-GGGCCGUCGGCGGggCCGuGUCUUc -3' miRNA: 3'- -GCgCCCGGCAGUUGUUagGGC-UAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 83437 | 0.73 | 0.711006 |
Target: 5'- aGCGGGCCGcCGGgAGcgCCUGGUCUg -3' miRNA: 3'- gCGCCCGGCaGUUgUUa-GGGCUAGAg -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 79170 | 0.69 | 0.881431 |
Target: 5'- cCGac-GCCGUCGGCAGUCUCGucGUCUCc -3' miRNA: 3'- -GCgccCGGCAGUUGUUAGGGC--UAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 77700 | 0.7 | 0.844721 |
Target: 5'- gCGUGGGCCccguguuccuGUCGcCGAUCCCGAcgUUCc -3' miRNA: 3'- -GCGCCCGG----------CAGUuGUUAGGGCUa-GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 67475 | 0.66 | 0.971698 |
Target: 5'- cCGCGGG-CGUCu-CGAUCaCCgugggGAUCUCc -3' miRNA: 3'- -GCGCCCgGCAGuuGUUAG-GG-----CUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 65885 | 0.69 | 0.874488 |
Target: 5'- aGCGGGuCCGUCAGguccUCCUGGUC-Ca -3' miRNA: 3'- gCGCCC-GGCAGUUguu-AGGGCUAGaG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 61444 | 0.66 | 0.959208 |
Target: 5'- cCGCGGguccuggccuacGCCGgguUCGGCGGUuccaaCCCGAUCUUc -3' miRNA: 3'- -GCGCC------------CGGC---AGUUGUUA-----GGGCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 60717 | 0.72 | 0.747345 |
Target: 5'- gCGCGGcagucgagagcuCCGUCGACGugGUCCuCGGUCUCg -3' miRNA: 3'- -GCGCCc-----------GGCAGUUGU--UAGG-GCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 58604 | 0.67 | 0.934124 |
Target: 5'- gGCGGaGUCGagaUCGACGcgcgcggcggaGUCgCCGGUCUCg -3' miRNA: 3'- gCGCC-CGGC---AGUUGU-----------UAG-GGCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 55652 | 0.68 | 0.923979 |
Target: 5'- aGaCGGGCUcgaGUCGGCAcuggCCGGUCUCg -3' miRNA: 3'- gC-GCCCGG---CAGUUGUuag-GGCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 52151 | 0.72 | 0.749224 |
Target: 5'- aGCGGGCCGaUCAcaGCugcuUCCCGAgcagUUCu -3' miRNA: 3'- gCGCCCGGC-AGU--UGuu--AGGGCUa---GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 50339 | 0.66 | 0.968874 |
Target: 5'- aCGCGuGGCCaccgCcGCGAUCCCGAg--- -3' miRNA: 3'- -GCGC-CCGGca--GuUGUUAGGGCUagag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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