Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15687 | 5' | -55.5 | NC_004065.1 | + | 190168 | 0.67 | 0.951722 |
Target: 5'- aCGCGGGUgcaGuUCGAUGAUCagauCGAUCUCc -3' miRNA: 3'- -GCGCCCGg--C-AGUUGUUAGg---GCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 188309 | 0.69 | 0.874488 |
Target: 5'- -aCGGGgCGUaCGACGGUCCUGuuuUCUCu -3' miRNA: 3'- gcGCCCgGCA-GUUGUUAGGGCu--AGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 92036 | 0.69 | 0.881431 |
Target: 5'- cCGCGGGCUcUUGGCGcgCUCGAggcaUCUCa -3' miRNA: 3'- -GCGCCCGGcAGUUGUuaGGGCU----AGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 1778 | 0.69 | 0.900987 |
Target: 5'- uCGUGuaUCGgaugCGACAAUCCCGGUCUg -3' miRNA: 3'- -GCGCccGGCa---GUUGUUAGGGCUAGAg -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 17787 | 0.68 | 0.912931 |
Target: 5'- aGCGgguGGCCGUCGcguuuggcGCGAUCCCGcgUgaUCa -3' miRNA: 3'- gCGC---CCGGCAGU--------UGUUAGGGCuaG--AG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 94845 | 0.68 | 0.923448 |
Target: 5'- cCGCuuagGGGCUGUCAAUcaucuuaGGUCCCGAagagccCUCa -3' miRNA: 3'- -GCG----CCCGGCAGUUG-------UUAGGGCUa-----GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 55652 | 0.68 | 0.923979 |
Target: 5'- aGaCGGGCUcgaGUCGGCAcuggCCGGUCUCg -3' miRNA: 3'- gC-GCCCGG---CAGUUGUuag-GGCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 145178 | 0.68 | 0.929164 |
Target: 5'- aCGUGGGagagCGUCAugAcgCCCGcUUUCg -3' miRNA: 3'- -GCGCCCg---GCAGUugUuaGGGCuAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 58604 | 0.67 | 0.934124 |
Target: 5'- gGCGGaGUCGagaUCGACGcgcgcggcggaGUCgCCGGUCUCg -3' miRNA: 3'- gCGCC-CGGC---AGUUGU-----------UAG-GGCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 110296 | 0.69 | 0.874488 |
Target: 5'- gCGCGacccGGCCGUC-ACGGUCUCGcagCUCu -3' miRNA: 3'- -GCGC----CCGGCAGuUGUUAGGGCua-GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 17233 | 0.69 | 0.867341 |
Target: 5'- cCGaaaGGGCC-UCAGCug-CCuCGAUCUCg -3' miRNA: 3'- -GCg--CCCGGcAGUUGuuaGG-GCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 196246 | 0.69 | 0.867341 |
Target: 5'- uGuCGGGCCGaaAGCGGUCCCGGc--- -3' miRNA: 3'- gC-GCCCGGCagUUGUUAGGGCUagag -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 197376 | 0.79 | 0.366372 |
Target: 5'- cCGCGGGCCGUgGcgauguugacagGCAGUCCCGGUgaCg -3' miRNA: 3'- -GCGCCCGGCAgU------------UGUUAGGGCUAgaG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 124648 | 0.75 | 0.592322 |
Target: 5'- uCGCcGGCCGUCAGCgAGUCCgGGUC-Cg -3' miRNA: 3'- -GCGcCCGGCAGUUG-UUAGGgCUAGaG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 170841 | 0.73 | 0.691483 |
Target: 5'- gGCGGGCCuUCAACGuccCCCGAUgaCg -3' miRNA: 3'- gCGCCCGGcAGUUGUua-GGGCUAgaG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 52151 | 0.72 | 0.749224 |
Target: 5'- aGCGGGCCGaUCAcaGCugcuUCCCGAgcagUUCu -3' miRNA: 3'- gCGCCCGGC-AGU--UGuu--AGGGCUa---GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 22909 | 0.72 | 0.758556 |
Target: 5'- aCGCGGucaguggcgGCgGUCGGCGGUUCCG-UCUCg -3' miRNA: 3'- -GCGCC---------CGgCAGUUGUUAGGGCuAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 151088 | 0.71 | 0.776896 |
Target: 5'- gCGCGGGCC-UgGugGcgCCCGAgCUCg -3' miRNA: 3'- -GCGCCCGGcAgUugUuaGGGCUaGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 77700 | 0.7 | 0.844721 |
Target: 5'- gCGUGGGCCccguguuccuGUCGcCGAUCCCGAcgUUCc -3' miRNA: 3'- -GCGCCCGG----------CAGUuGUUAGGGCUa-GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 164193 | 0.7 | 0.859993 |
Target: 5'- uCGCGGGCCcUCAugGAUCUCGc-CUUu -3' miRNA: 3'- -GCGCCCGGcAGUugUUAGGGCuaGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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