Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15687 | 5' | -55.5 | NC_004065.1 | + | 52151 | 0.72 | 0.749224 |
Target: 5'- aGCGGGCCGaUCAcaGCugcuUCCCGAgcagUUCu -3' miRNA: 3'- gCGCCCGGC-AGU--UGuu--AGGGCUa---GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 22909 | 0.72 | 0.758556 |
Target: 5'- aCGCGGucaguggcgGCgGUCGGCGGUUCCG-UCUCg -3' miRNA: 3'- -GCGCC---------CGgCAGUUGUUAGGGCuAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 151088 | 0.71 | 0.776896 |
Target: 5'- gCGCGGGCC-UgGugGcgCCCGAgCUCg -3' miRNA: 3'- -GCGCCCGGcAgUugUuaGGGCUaGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 77700 | 0.7 | 0.844721 |
Target: 5'- gCGUGGGCCccguguuccuGUCGcCGAUCCCGAcgUUCc -3' miRNA: 3'- -GCGCCCGG----------CAGUuGUUAGGGCUa-GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 92036 | 0.69 | 0.881431 |
Target: 5'- cCGCGGGCUcUUGGCGcgCUCGAggcaUCUCa -3' miRNA: 3'- -GCGCCCGGcAGUUGUuaGGGCU----AGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 188309 | 0.69 | 0.874488 |
Target: 5'- -aCGGGgCGUaCGACGGUCCUGuuuUCUCu -3' miRNA: 3'- gcGCCCgGCA-GUUGUUAGGGCu--AGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 110296 | 0.69 | 0.874488 |
Target: 5'- gCGCGacccGGCCGUC-ACGGUCUCGcagCUCu -3' miRNA: 3'- -GCGC----CCGGCAGuUGUUAGGGCua-GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 17233 | 0.69 | 0.867341 |
Target: 5'- cCGaaaGGGCC-UCAGCug-CCuCGAUCUCg -3' miRNA: 3'- -GCg--CCCGGcAGUUGuuaGG-GCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 196246 | 0.69 | 0.867341 |
Target: 5'- uGuCGGGCCGaaAGCGGUCCCGGc--- -3' miRNA: 3'- gC-GCCCGGCagUUGUUAGGGCUagag -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 164193 | 0.7 | 0.859993 |
Target: 5'- uCGCGGGCCcUCAugGAUCUCGc-CUUu -3' miRNA: 3'- -GCGCCCGGcAGUugUUAGGGCuaGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 42925 | 0.7 | 0.843938 |
Target: 5'- aCGCGaGCagcuucgCGUCAGC-GUCCCGAUCUUu -3' miRNA: 3'- -GCGCcCG-------GCAGUUGuUAGGGCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 31308 | 0.71 | 0.812041 |
Target: 5'- gGCGuacGCCGUCAACAGacUCCUGGcgCUCg -3' miRNA: 3'- gCGCc--CGGCAGUUGUU--AGGGCUa-GAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 20312 | 0.71 | 0.798251 |
Target: 5'- cCGCGGcagaGCCGguaggugggaauaauUCAACcg-CCCGAUCUCa -3' miRNA: 3'- -GCGCC----CGGC---------------AGUUGuuaGGGCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 60717 | 0.72 | 0.747345 |
Target: 5'- gCGCGGcagucgagagcuCCGUCGACGugGUCCuCGGUCUCg -3' miRNA: 3'- -GCGCCc-----------GGCAGUUGU--UAGG-GCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 226719 | 0.72 | 0.720676 |
Target: 5'- aGCGGcGCUGgcagaaGGCGAgCCCGGUCUCg -3' miRNA: 3'- gCGCC-CGGCag----UUGUUaGGGCUAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 83437 | 0.73 | 0.711006 |
Target: 5'- aGCGGGCCGcCGGgAGcgCCUGGUCUg -3' miRNA: 3'- gCGCCCGGCaGUUgUUa-GGGCUAGAg -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 139646 | 0.73 | 0.691483 |
Target: 5'- gCGCGGGCCGUCG-CGA-CCCcAUCa- -3' miRNA: 3'- -GCGCCCGGCAGUuGUUaGGGcUAGag -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 225477 | 0.73 | 0.671773 |
Target: 5'- uCGCGuGGCuCGUCAGCcgcCCCGcgCUCg -3' miRNA: 3'- -GCGC-CCG-GCAGUUGuuaGGGCuaGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 201738 | 0.76 | 0.54332 |
Target: 5'- cCGCGGGCCGUCGgguCGA-CCgGgAUCUCg -3' miRNA: 3'- -GCGCCCGGCAGUu--GUUaGGgC-UAGAG- -5' |
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15687 | 5' | -55.5 | NC_004065.1 | + | 67475 | 0.66 | 0.971698 |
Target: 5'- cCGCGGG-CGUCu-CGAUCaCCgugggGAUCUCc -3' miRNA: 3'- -GCGCCCgGCAGuuGUUAG-GG-----CUAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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